Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq79 132 6e-26 seq114 113 6e-20 seq812 109 7e-19 seq1290 89.7 7e-13 >seq79 Length=12267 Score = 132 bits (146), Expect = 6e-26 Identities = 370/549 (67%), Gaps = 23/549 (4%) Strand=Plus/Plus Query 11235 TTCT-TCACGTCCGTGAACATCAGGTAAAGAAACTTGTATTTTA-CGATCAAATCTACCG 11292 |||| ||||| || | | |||||||||||||| | ||| | | || ||||| | ||| Sbjct 1628 TTCTCTCACGCCCATTTATATCAGGTAAAGAAA-TAGTAATCTGTCGGTCAAAACGACCA 1686 Query 11293 GGGCGTAATAACGCATCGTCGAGTATATCGATACGGTTTGTTGCACCTATAACAACAATT 11352 || | | || || || || | || |||||| |||||| | || | | | Sbjct 1687 GGTCTAAGTAGTGCTGGATCTAGGACGTCTGGACGGTTAGTTGCAGCAATTATTATCA-- 1744 Query 11353 TCAGTTTCATT---CTCGAAACCATCCATTTCTGTTAATAATTGGTTAATTGTTTGTTCA 11409 || |||||| ||||||||||||||| || | ||| ||||| | ||||||||| Sbjct 1745 -CACCTTCATTAGACTCGAAACCATCCATCTCAACCAGTAACTGGTTTAATGTTTGTTCC 1803 Query 11410 CGCTCATCGTTTGCCGCAAACCCATTC--ATACTTCTTTTCTTACCAATCGCATCAATTT 11467 | || ||||| |||| | || | | || | | | | |||| | ||||| |||| Sbjct 1804 CTTTCGTCGTTA-CCGCCA-CCAAGACCGATGCCGCGATGCCTACCTACTGCATCTATTT 1861 Query 11468 CATCTATAAAGATAATACACGGTTGATTTTCACGTGCCAAT-TCAAATATATCACGGACT 11526 | ||||| || || ||||| || ||||| | | || ||||| ||||| ||||| Sbjct 1862 CGTCTATGAAAATTATACAAGGAGCATTTTT-CTTACCTTGATCAAACATATCCCGGACA 1920 Query 11527 CTTTTTGCGCCTACGCCTACAAACATTTCAACGAACGATGACCCCG-AACACTGAATAAA 11585 | |||| || || || ||||||||||||||||| || || | || ||| || ||| Sbjct 1921 CGGCTTGCACCAACACCGACAAACATTTCAACGAAATCAGATCCAGAAATACT-AAAAAA 1979 Query 11586 AGGAACGGAAGATTCACCCGCTATAGCACGTGCTAAAAGTGTTTTACCTGTACCTGGTTT 11645 || || || |||||| || || ||||| || | || |||||||| || || || Sbjct 1980 CGGTACATTAGCTTCACCTGCAATTGCACGAGCAAGTAGAGTTTTACCAGTTCCAGGGGA 2039 Query 11646 ACCTGTTAATAATGCA-CCCCTTGGTATTTTAGCACCGGTACCAAAGTACTTTTCTGGC- 11703 ||| |||| || ||| || ||||||| || |||| || || | ||| || | Sbjct 2040 ACCAATTAA-AAGGCATCCTTTTGGTATCTTCCCACC--TAACACTTGAAATTTTTGCCT 2096 Query 11704 -GCCTTGAGAAAATCAACAATTTCTTCGAGCTCATCTTTCGCGCTATCTATACCCTGAAC 11762 || ||||||||||||||||| | | ||| ||||| || ||| || || ||| Sbjct 2097 TTGTTTAAGAAAATCAACAATTTCAACCAACTCTTCTTTTGCTTCATCAATCCCAGCAAC 2156 Query 11763 ATCATCAAA 11771 ||||||||| Sbjct 2157 ATCATCAAA 2165 >seq114 Length=11559 Score = 113 bits (124), Expect = 6e-20 Identities = 184/261 (70%), Gaps = 17/261 (7%) Strand=Plus/Minus Query 11233 ATTTCTTCACGTCCGTGAACATCAGGTAAAGAAACTTGTATTTTACGATCAAATCTACCG 11292 ||| |||||||| | | || ||||||| || | |||| ||||||||||||||| Sbjct 8401 ATTGCTTCACGTTCTTTAATATCAGGTCAACTTAAAGAAATTTGACGATCAAATCTACCT 8342 Query 11293 GGGCGTAATAACGCATCGTCGAGTATATCGATACGGTTTGTTGCACCTATAACAACAATT 11352 || ||||||||||| || || |||| ||| |||||| || ||| | |||| || || | Sbjct 8341 GGACGTAATAACGCTTCATCAAGTACATCAGCACGGTTAGTGGCAGCCATAATAATAACT 8282 Query 11353 TC--AGTTTCATTCTCGAAACCATCCATTTCTGTTAATAATTGGTTAATTGTTTGTTCAC 11410 | |||| | | || | ||||||||||| |||||||||||| | |||||| Sbjct 8281 CCCAAGTT--AGTTTCATATCCATCCATTTCAACTAATAATTGGTTTAAAGTTTGT---- 8228 Query 11411 GCTCATCGTTTGCCG--CAAACCCATTCATACTTCTTTTCTTACCAATCGCATCAATTTC 11468 |||| |||| | |||| | | | ||||||| || | ||||||||||| Sbjct 8227 --TCATTAGTTGCAGTTGAAAC----TGAGGCACGTTTTCTT-CCTACTGCATCAATTTC 8175 Query 11469 ATCTATAAAGATAATACACGG 11489 ||| ||||| |||||||| || Sbjct 8174 ATCAATAAAAATAATACAAGG 8154 >seq812 Length=1388629 Score = 109 bits (120), Expect = 7e-19 Identities = 140/188 (74%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 7597 CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656 ||| ||||||||||| || | || |||||||| || || || || || || || || || Sbjct 467799 CTTGTCGAGACCGTAGGCCAGCGCGGCCGCCGTCGGCTCGTTGATGATGCGCAG-CACTT 467741 Query 7657 C-AGGCCAGCAATAGTTGCCG-CATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 | || || || || |||||| | || || || || || || || | ||||| |||||| Sbjct 467740 CGAGACCGGCGATC-TTGCCGGCGTCCTTGGTGGCCTGACGCTGGGCGTCGTTGAAGTAG 467682 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 ||||| || || | |||||| | | ||| |||| ||||||| || ||||||| | ||| Sbjct 467681 GCCGGCACGGTGATGACCGCCTGCTCGACCTTCTGGCCGAGATGCGCTTCCGCGGTCTCT 467622 Query 7775 TTCATTTT 7782 |||||||| Sbjct 467621 TTCATTTT 467614 >seq1290 Length=26696 Score = 89.7 bits (98), Expect = 7e-13 Identities = 219/328 (67%), Gaps = 8/328 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || ||||| |||| | || || || ||||| || || || |||| || Sbjct 2958 TCGAAGTCCTCACCGCCCAGGAAGGTGTCGCCGTTGGTCGACTTCACCTCGAAGACGCCG 2899 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | | || | | | ||| || || || || || || ||||||||| | | | || Sbjct 2898 TCGCCGATCTCCAGGATCGAGACGTCGAAGGTGCCGCCGCCCAGGTCATAGACGG---CG 2842 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || | | | |||| |||||| || || || || || | ||| ||||| || || || Sbjct 2841 ATCTTCTGGCCGTC---GTTCTTCTCCAGGCCATAGGCCAAAGCAGCCGCGGTCGGCTCG 2785 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCG-CATCTTTCGTCGCTTGTCG 7695 || || || || || | |||||| || || |||||| | || || || || || || Sbjct 2784 TTGATGATGCGCAGGACTTCCAGGCCGGCGATC-TTGCCGGCGTCCTTGGTGGCCTGACG 2726 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || ||||| |||||||||||||| || | ||| || | ||| || |||| || || Sbjct 2725 CTGGCTGTCGTTGAAGTAGGCCGGGACGGTGATGACGGCCTGCGTCACCTTCTCGCCCAG 2666 Query 7756 ATACGATTCCGCGATATCTTTCATTTTG 7783 ||| | ||| ||| || ||||| ||| Sbjct 2665 ATAGGCTTCGGCGGCTTCCTTCATCTTG 2638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635120899199160