Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq422 123 2e-22 >seq422 Length=7389 Score = 123 bits (136), Expect = 2e-22 Identities = 273/407 (67%), Gaps = 11/407 (3%) Strand=Plus/Plus Query 552292 TTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGA 552351 || |||| ||||||| |||||| |||| | ||| | ||||| | ||||| | |||| Sbjct 5706 TTTTACTATTAGATGTAACTCCTTTATCATTAGGTATTGAAACTTTAGGAGGAGTAATGA 5765 Query 552352 CTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGT 552411 | | ||| | | ||||||||| ||||| |||||| || | || ||||| || Sbjct 5766 CGCCATTAATCTCTCGTAATACTACTGTTCCTACTAAAAAGTCACAAGTTTTTTCAACTG 5825 Query 552412 ATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTA 552471 | ||| |||||| | |||||| ||| |||| |||||||| | | | ||| Sbjct 5826 CTGAAGACAATCAACCCGCTGTTGATATTAGTGTTTTACAAGGAGAACGTCCACTAGCTA 5885 Query 552472 AAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAG 552531 |||||||| || ||| ||| ||| | ||| ||||| || || || | || | Sbjct 5886 AAGATAATCATTCACTGGGTCGTTTCCAATTAAGTGGTATCGAACCAGCACCAAGAGGTG 5945 Query 552532 TACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTT 552591 | || ||||||||||||||||| |||||||||| ||||| ||| | ||| | |||| Sbjct 5946 TTCCACAAATTGAAGTTACTTTTGATATCGATGTTAATGGTATTGTATCTGTTAGTGCTA 6005 Query 552592 GTGAT---AAATCTAGCAACAAGAGTAAAAATATTACTNNNNNNNATAATCGTGGTAGAT 552648 ||| ||| ||| | |||| ||||| |||||| ||| |||||| | Sbjct 6006 AAGATCTAAAAACTA--ATAAAGAACAAAAA-ATTACTATTAGCAATA---GTGGTACTT 6059 Query 552649 TTACTGATGAACAAATTAAACGTATGGTCGAAGAAGCT--AAAGAAT 552693 | | | | || ||||| || ||||| |||| ||| ||||||| Sbjct 6060 TAAGTAAAGACGAAATTGAAAAAATGGTACAAGATGCTGAAAAGAAT 6106 Score = 100 bits (110), Expect = 2e-15 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 361705 ACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGC 361764 ||||||||| | | |||||| |||||||||||||| ||| | || || | ||| || Sbjct 5092 ACCATAAGCGATGGCAGCAGCAGTTGGTTCGTTAATAATTCTTTCTACTTTTAATCCTGC 5033 Query 361765 TATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGT 361824 || || ||||| | ||| |||| ||||||| ||| ||||| || ||||||||||| Sbjct 5032 AATAATTCCTGCATTTTTAGTAGCTTCACGTTGTTCATTGTTAAAGTAAGCAGGAACAGT 4973 Query 361825 AATCACTGCTTTT 361837 ||| ||||||||| Sbjct 4972 AATAACTGCTTTT 4960 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/152 (73%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| || ||||| || || || ||||| | ||||||| ||||||||||| |||| Sbjct 4964 GCAGTTATTACTGTTCCTGCTTACTTTAACAATGAACAACGTGAAGCTACTAAAAATGCA 5023 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 ||| |||||| ||| | || || | ||||| || ||||| ||||||||||| | Sbjct 5024 GGAATTATTGCAGGATTAAAAGTAGAAAGAATTATTAACGAACCAACTGCTGCTGCCATC 5083 Query 550520 GCATATGGACTTGATAAAC---ATAATGATCA 550548 || ||||| | || |||| |||| ||||| Sbjct 5084 GCTTATGGTTTAGACAAACAAGATAAAGATCA 5115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029216726119510