Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq422 123 2e-22
>seq422
Length=7389
Score = 123 bits (136), Expect = 2e-22
Identities = 273/407 (67%), Gaps = 11/407 (3%)
Strand=Plus/Plus
Query 552292 TTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGA 552351
|| |||| ||||||| |||||| |||| | ||| | ||||| | ||||| | ||||
Sbjct 5706 TTTTACTATTAGATGTAACTCCTTTATCATTAGGTATTGAAACTTTAGGAGGAGTAATGA 5765
Query 552352 CTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGT 552411
| | ||| | | ||||||||| ||||| |||||| || | || ||||| ||
Sbjct 5766 CGCCATTAATCTCTCGTAATACTACTGTTCCTACTAAAAAGTCACAAGTTTTTTCAACTG 5825
Query 552412 ATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTA 552471
| ||| |||||| | |||||| ||| |||| |||||||| | | | |||
Sbjct 5826 CTGAAGACAATCAACCCGCTGTTGATATTAGTGTTTTACAAGGAGAACGTCCACTAGCTA 5885
Query 552472 AAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAG 552531
|||||||| || ||| ||| ||| | ||| ||||| || || || | || |
Sbjct 5886 AAGATAATCATTCACTGGGTCGTTTCCAATTAAGTGGTATCGAACCAGCACCAAGAGGTG 5945
Query 552532 TACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTT 552591
| || ||||||||||||||||| |||||||||| ||||| ||| | ||| | ||||
Sbjct 5946 TTCCACAAATTGAAGTTACTTTTGATATCGATGTTAATGGTATTGTATCTGTTAGTGCTA 6005
Query 552592 GTGAT---AAATCTAGCAACAAGAGTAAAAATATTACTNNNNNNNATAATCGTGGTAGAT 552648
||| ||| ||| | |||| ||||| |||||| ||| |||||| |
Sbjct 6006 AAGATCTAAAAACTA--ATAAAGAACAAAAA-ATTACTATTAGCAATA---GTGGTACTT 6059
Query 552649 TTACTGATGAACAAATTAAACGTATGGTCGAAGAAGCT--AAAGAAT 552693
| | | | || ||||| || ||||| |||| ||| |||||||
Sbjct 6060 TAAGTAAAGACGAAATTGAAAAAATGGTACAAGATGCTGAAAAGAAT 6106
Score = 100 bits (110), Expect = 2e-15
Identities = 102/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 361705 ACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGC 361764
||||||||| | | |||||| |||||||||||||| ||| | || || | ||| ||
Sbjct 5092 ACCATAAGCGATGGCAGCAGCAGTTGGTTCGTTAATAATTCTTTCTACTTTTAATCCTGC 5033
Query 361765 TATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGT 361824
|| || ||||| | ||| |||| ||||||| ||| ||||| || |||||||||||
Sbjct 5032 AATAATTCCTGCATTTTTAGTAGCTTCACGTTGTTCATTGTTAAAGTAAGCAGGAACAGT 4973
Query 361825 AATCACTGCTTTT 361837
||| |||||||||
Sbjct 4972 AATAACTGCTTTT 4960
Score = 87.8 bits (96), Expect = 1e-11
Identities = 111/152 (73%), Gaps = 3/152 (2%)
Strand=Plus/Plus
Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459
||||| || ||||| || || || ||||| | ||||||| ||||||||||| ||||
Sbjct 4964 GCAGTTATTACTGTTCCTGCTTACTTTAACAATGAACAACGTGAAGCTACTAAAAATGCA 5023
Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519
||| |||||| ||| | || || | ||||| || ||||| ||||||||||| |
Sbjct 5024 GGAATTATTGCAGGATTAAAAGTAGAAAGAATTATTAACGAACCAACTGCTGCTGCCATC 5083
Query 550520 GCATATGGACTTGATAAAC---ATAATGATCA 550548
|| ||||| | || |||| |||| |||||
Sbjct 5084 GCTTATGGTTTAGACAAACAAGATAAAGATCA 5115
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029216726119510
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |