Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_016765.1 Length=54024 Score E Sequences producing significant alignments: (Bits) Value seq743 259 2e-64 seq97 197 5e-46 seq1095 132 2e-26 >seq743 Length=263205 Score = 259 bits (286), Expect = 2e-64 Identities = 521/762 (68%), Gaps = 23/762 (3%) Strand=Plus/Minus Query 4865 CTCCGCAGCGTCGACTGACCATCCGCGACCTGGTTGCGCCTGGCACCACTGAGTCGAACT 4924 |||||||||| |||||||||||||| || | ||||| || || | ||||| | Sbjct 16318 CTCCGCAGCGCAAGTTGACCATCCGCGACTTGCTCGCGCCGGGTCAGACCGCGTCGAGCA 16259 Query 4925 CCGTCGAGTACGTCCGCGAGACCGGCTTCGTCAACAATGC-CGCTCCTGTTTCGGAAGGC 4983 || || |||||| || || |||||| |||||| || ||| || || |||||||| Sbjct 16258 ATGTTGAATACGTCAAGGAAACGGGCTTCACCAACAACGCTCGC-CCGGTGACGGAAGGC 16200 Query 4984 ACCCAGA---AGCCATACTCCGACCTGACCTTCGAACTGGAAAACGCGCCGGTTCGCACC 5040 |||| |||| | || ||| | |||||| | ||| | |||||||||||||| Sbjct 16199 ---CAGACCAAGCCCAAGTCTGACATCACCTTCAATATGGCATCTGCGCCGGTTCGCACG 16143 Query 5041 ATCGCACACCTGTTCAAGGCAAGTCGCCAGATCCTGGACGACGCTTCGGCCTTGCAGAGC 5100 || ||||| | |||||||| || |||||||| || || || | | ||| |||| Sbjct 16142 ATAGCACATATCTTCAAGGCGTCACGTCAGATCCTTGATGATGCGCCTGGTTTGGCGAGC 16083 Query 5101 TACATCGATGCGCGCGCTCGTTACGGCCTGATGCTGGTCGAAGAAGGTCAACTGCTCTAC 5160 |||||| |||| |||| |||||||||| | | || || ||| ||| || || | Sbjct 16082 TACATCAATGCCCGCGGCACCTACGGCCTGAAGTTCGTTGAGGAAACTCAGCTTCTGACC 16023 Query 5161 GGGAACGGGACCGGCGCCAATCTGCACGGCATCATTCCGCAGGCACAGGCCTACGCGCCG 5220 || ||||| || || || ||| |||| || | |||||||| || || |||||| Sbjct 16022 GGCAACGGCACTGGTCAGAACCTGAACGGTATTGTGCCGCAGGCTTCTGCTTATGCGCCG 15963 Query 5221 CCGAGTGGCGTAGTGGTAACCGCCGAGCAGCGAATCGACCGCATCCGCCTGGCGATCCTT 5280 | | | | | || | | ||| ||| ||||| ||| | ||||| || | | Sbjct 15962 TC-ATT--CAACGCGG---CTGACGAACAGGCTATCGATCGCCTTCGCCTCGCCCTGTTG 15909 Query 5281 CAGGCGCAACTGGCCGAGTTCCCGGCCAGCGGTATCGTGCTCAACCCCATCGACTGGGCG 5340 |||| ||||| | | ||||| | | |||| |||||||| | || ||||| Sbjct 15908 CAGGTTATCCTGGCGAATTATCCGGCGTCGGCTTTCGTTCTCAACCCGGTTGATTGGGCA 15849 Query 5341 CTGATCGAGCTGACCAAGGACGCCGAGAACCGTTACATCATCGGCAGCCCGCAGAACGGC 5400 | || || ||||||||||| | || || || ||| | |||| | || | || | Sbjct 15848 CGCATTGAACTGACCAAGGATACTCAGGGTCGCTATATCGTTGGCAAC--GCCG--CGTC 15793 Query 5401 ACCACT----CCGACCCTCTGGCGTCTGCCGGTGGTGGAAACCCAGGCCATCACTCAGGA 5456 || | ||| | |||||| ||| ||||||||||| | ||||| || || | Sbjct 15792 TCCGATTGGCCCGTCGCTCTGGAATCTCCCGGTGGTGGAGTCGCAGGCGATGACCGCCGG 15733 Query 5457 CGAGTTCCTGACCGGTGCGTTCTCTCTCGGCGCCCAGATCTTCGACCGCATGGACATCGA 5516 |||||||||||| || |||||| |||||| || ||| | ||||| ||||||| | || Sbjct 15732 CGAGTTCCTGACGGGCGCGTTCAATCTCGGTGCGCAGGTATTCGATCGCATGGGTGTTGA 15673 Query 5517 GGTTCTGGTTTCCACCGAGAACGACAAGGACTTCGAGAACAACATGGTCACCATCCGCGC 5576 |||||| | || ||||| ||| | ||||| ||||| |||||| ||||||||| | Sbjct 15672 GGTTCTTCTGTCGACCGAAAACTCGGACGACTTTGAGAAGAACATGTGCACCATCCGAGT 15613 Query 5577 TGAGGAGCGGCTGGCCTTCGCGGTCTATCGCCCCGAG-GCTT 5617 || ||||| | ||||| ||||| |||||||||||| |||| Sbjct 15612 GGAAGAGCGCATTGCCTTGGCGGTGTATCGCCCCGAGAGCTT 15571 >seq97 Length=479585 Score = 197 bits (218), Expect = 5e-46 Identities = 345/492 (70%), Gaps = 15/492 (3%) Strand=Plus/Minus Query 5137 GTCGAAGAAGGTCAACTGCTCTACGGGAACGGGACCGGCGCCAATCTGCACGGCATCATT 5196 |||||||| || || ||| | || | || |||||| || |||| ||||||||| Sbjct 247632 GTCGAAGAGAACCAGCTTCTCAATGGCGATGGCACCGGCCAGAACCTGCTCGGCATCATC 247573 Query 5197 CCGCAGGCACAGGCCTACGCGCCGCCGAGTGGCGTAGTGGTAACCGCC---GAGCAGCGA 5253 ||||||||| ||||| || ||| |||| | ||||| | | | Sbjct 247572 CCGCAGGCAACGGCCTTTGCAGTCCCGGCTGGCACGACCATGCCCGCCACTGTGACCGGT 247513 Query 5254 ATCGACCGCATCCGCCTGGCGATCCTTCAGGCGCAACTGGCCGAGTTCCCGGCCAGCGGT 5313 || |||||| | || ||||||| |||||||| ||||| || | ||||| | ||| Sbjct 247512 ATTGACCGCCTTCGTGTGGCGATGCTTCAGGCCGCTCTGGCTGAATATCCGGCAACGGGT 247453 Query 5314 ATCGTGCTCAACCCCATCGACTGGGCGCTGATCGAGCTGACCAAGGACGCCGAGAACCGT 5373 ||| |||| ||| || |||||| | |||||| || |||||| || || |||| Sbjct 247452 CACGTCCTCAGCCCGATTGACTGGACTTCGATCGAACTCCTGAAGGACACCCAGGGCCGT 247393 Query 5374 TACATCATCGGCAGCCCGCA--GAACGGCACCACTCCGACCCTCTGGCGTCTGCCGGTGG 5431 ||||||||||||| |||||| ||||| | |||||||||||||| |||||||||| | Sbjct 247392 TACATCATCGGCAACCCGCAGGGAACG--ATTGCTCCGACCCTCTGGGGTCTGCCGGTTG 247335 Query 5432 TGGAAACCCAGGCCAT-CACTCAGGACGAGTTCCTGACCGGTGCGTTCTCTCTCGGCGCC 5490 | ||||||||||| | |||| | ||||||| |||||||| ||| || || || Sbjct 247334 TCACGACCCAGGCCATGGCCGCAGG-CAAGTTCCTCACCGGTGCATTCAAGCTGGGTGCG 247276 Query 5491 CAGATCTTCGACCGCATGGACA---TCGAGGTTCTGGTTTCCACCGAGAACGACAAGGAC 5547 ||||| ||||||||| ||| || ||| || || | ||||||||||| | ||| Sbjct 247275 CAGATTTTCGACCGC-TGG-CAGGCTCG-CGTCGAAGTCGCAACCGAGAACGAAGACGAC 247219 Query 5548 TTCGAGAACAACATGGTCACCATCCGCGCTGAGGAGCGGCTGGCCTTCGCGGTCTATCGC 5607 ||| || ||| | |||||||||| ||| || ||||| || || | || |||||||| Sbjct 247218 TTCATCAAGAACCTCGTCACCATCCTCGCAGAAGAGCGTCTTGCTCTGGCCGTCTATCGT 247159 Query 5608 CCCGAGGCTTTC 5619 || || || ||| Sbjct 247158 CCAGAAGCGTTC 247147 >seq1095 Length=1089284 Score = 132 bits (146), Expect = 2e-26 Identities = 322/478 (67%), Gaps = 24/478 (5%) Strand=Plus/Plus Query 37282 GTGCGGGGCACCGACGCCCGCAGACGG---GAACGCAACAGCCCCGAAGGCATACTCCAT 37338 ||| || || ||||||||||||| || || || ||| |||| ||||||| ||| Sbjct 151045 GTGTGGCGCGCCGACGCCCGCAG-CGCACAGATCGG--CAGTCCCGCAGGCATATCCCAG 151101 Query 37339 GGCTTCCAGGTCAGCTTGTACAAGGTCGAGCCAAGGCTC-CG--CGTCCTTGCTTGCAAC 37395 | ||||||||||||| ||| | ||||||| || || |||||||||| ||||| Sbjct 151102 GTCTTCCAGGTCAGCACGTATTCCGGCGAGCCAT---TCACGTCCGTCCTTGCTCGCAAC 151158 Query 37396 CTGCTCACCAAGGACTTCTCCAGGGCGGCGCTGGCGGATGAGCCAGGCAAAATGTGGCCA 37455 |||||| |||| ||| | ||| || | | |||||| | | |||| ||||| Sbjct 151159 CTGCTCTCCAAAGACGATTGAAGGCGAGCAGTCGGCGATGAGGCTGTGAAAAGCGGGCCA 151218 Query 37456 GAGATGACGCGGGTCATCAAACCCA--GCTCCTTCGCCTGCCGAGGAGAAAGGTTGGCAA 37513 || || | ||| | ||| || ||||| | ||| || | || || || Sbjct 151219 CAGGTGTCTATCGTCGGCGTGCCCCTTGCGCCTTCCCGCGCCC--GAAAGCGGCTGACAG 151276 Query 37514 GGACAGGAACCGGTCCAAACAGGTCGATCATCTGGCCAGCCGGCGCGGCGAAGGGCG-AG 37572 |||||||| ||||||||| |||||||| ||||| || ||| | || | |||| || Sbjct 151277 GGACAGGATCCGGTCCAACATTCGCGATCATCCGGCCATCCTGCGAGCCGCAAGGCGTAG 151336 Query 37573 CGACCAGACGCCGATTCCCGCGAAGAAGTGGCATTGTGTGTAGTGCTTG-AGGTCATCTG 37631 | ||| |||| || || |||||||| || ||| |||||| || | | ||| || | Sbjct 151337 CT-CCATCCGCCAATCCCGGCGAAGAAATGCGCTTGCGTGTAGC-CTCGCACGTCGTCGG 151394 Query 37632 GGTGAACATCCTCGANNNNNNNNNNNNNNNNCGACGTCGCCAGGTGCTATGTGGCCGGCG 37691 | ||||| ||| | |||||||| || || ||| | ||||| Sbjct 151395 GCCTGACATCGACGATGCTTCGCTCGT----CAACGTCGCCTGGCGCGATGAGCCCGGCA 151450 Query 37692 GCGATCAGGTTTCGAAGCCACTGAGCGGCATATGGGTCGAATTCGTTGTAGTAGGCGC 37749 ||||| |||||||| |||||||| || || | || || |||||||||||||| |||| Sbjct 151451 GCGATGAGGTTTCGGAGCCACTGCGCTGCGAACGGATCAAATTCGTTGTAGTACGCGC 151508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 172752124849468