Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_016767.1 Length=60714 Score E Sequences producing significant alignments: (Bits) Value seq949 369 1e-97 seq1134 100 1e-16 seq1495 96.9 1e-15 >seq949 Length=99569 Score = 369 bits (408), Expect = 1e-97 Identities = 808/1196 (68%), Gaps = 36/1196 (3%) Strand=Plus/Minus Query 43894 CCAGCATGGCCCGCACGAACCTGTCCCATATCTCCATGGCCTCGCGCTTCTCGGGCATGT 43953 ||| |||||| || ||||| | |||||| | ||||| | | |||||||| ||||| Sbjct 31867 CCAACATGGCGCGGACGAATTTATCCCATTTGGCCATGCCGGCACGCTTCTCCACCATGT 31808 Query 43954 AGCTGTAGCGGTCATAGTGCCGCGAGCTGACGTCGTGCCGGCTATGGTTCTGAAGCCGGT 44013 || | ||||||| ||||| ||||||||||| ||| || ||||| || || || | Sbjct 31807 AGTTCCAGCGGTCGTAGTGTTTTGAGCTGACGTCCTGCAGGGCGTGGTTTTGCAGGCGAT 31748 Query 44014 CCCCTTATCTCCTGCGTCAGCCCGGCCTTGCCTGCCAGCGTTTTCCACGTCCGCCGCAGG 44073 | | || |||| || || || |||||||| |||||||| || |||| || |||||| Sbjct 31747 CGCGG-ATTTCCTTCGGCACGCCTGCCTTGCCGGCCAGCGTCTTGAACGTTCGGCGCAGG 31689 Query 44074 TCGCGGTTCGTGATGTCCGGCAGCACGCCCCGGTCCCGTTGCCGCCAAAGGGCGGAA--- 44130 |||||||| ||| || || | ||||| || || ||||| ||||| | | || Sbjct 31688 TCGCGGTTGGTGGCGTAGGGGATGACGCCGCGATCGCGTTGGCGCCAGA---CAAAACTG 31632 Query 44131 TAGAGGGTGCCGTGACTGACGGGCTTCTCGGGATCCATCTGCGAGGGGAAGAACCAGCCG 44190 || ||||||||||| || || |||||| || || | ||| |||||||||||||| Sbjct 31631 TACAGGGTGCCGTGGCTTACAGGCTTCGATGGGTCTTTGGCCGAAGGGAAGAACCAGCCC 31572 Query 44191 TGCTCGTTCGTGCCGATTTCGTCCAGCAGCTCGATGGCGAGCGACGGCAGCGGGATCGTG 44250 ||| |||| ||| || | ||| ||| || ||| | || | || | | Sbjct 31571 CACTCATTCGGCTTGATCGACTCGATCAGTTCGGCAGCAAGCAAGGGTACAGGAACAGCA 31512 Query 44251 TGAGGCTTCCCGTTCTTCGTCTTTGACCAGTCGAGCAGCCCTTCAGCCTTGTCGTAC--- 44307 || |||| ||||||| || || |||||||||| | || ||| |||| | | | Sbjct 31511 TGGGGCTGGTCGTTCTTGGTTTTGGACCAGTCGATGATCCGTTC---CTTGGCATCCCAT 31455 Query 44308 TGGTCCCGGTGCAGGGCGGCAATTTCCTCCACGCGCTGCCCGGTGAGCATCAGCAGGCGC 44367 || || |||||| || || ||||| |||||||| ||||| ||||| | || || Sbjct 31454 TGATCGACATGCAGGCGTGCGATCTCCTCGACGCGCTGGCCGGTCAGCATGATGAGCTGC 31395 Query 44368 ATGGCGTCAAGGTACGGGCCATGGATGGGCCTGTCCGGGTTTCCCAGCCAGTCCCACATG 44427 | |||| |||| | | ||||| |||| |||| ||| | | |||||| | | Sbjct 31394 ACGGCGCGCGGGTAGGAGGGATGGACGGGCGTGTCGGGGCATTCGAGCCAGCGATAGAGC 31335 Query 44428 CGGCAGTAGTCCGCCTCACTGAGCCAGCGCGTGCCAACCACCTTAGGCTCGGTGGGGATC 44487 || | | || | ||| ||||||||| || || ||||| |||||||| || || Sbjct 31334 TGGACGAATTCGTCTTCATCGAGCCAGCGAGTACCCTGAACCTTCGGCTCGGTTGGAATG 31275 Query 44488 GAGGCCGCCGGGTTGTGAATGAGCTT--GAACCGGCGCGGGC--TGCTGGAGCGGTAGTC 44543 | |||||| ||| || | | | ||| ||||| | | ||||| || ||||| Sbjct 31274 CCTGTCGCCGGATTG--AAGGGGATGCGGAAGCGGCGGGAGGATTGCTGC--CGATAGTC 31219 Query 44544 CAGCTCCGATTTCAGCCCCCACGCGAAGGCCGCCCGGATGTAGGAGCGAACGTGGTCCGC 44603 || || |||| ||||| | ||| || || ||| |||||||| || ||||| || Sbjct 31218 GTTGTCGGACTTCATGCCCCAAGAGAAAGCGGCATGGAGATAGGAGCGTACATGGTCGGC 31159 Query 44604 CATGGAGTTTTTGCCGCGCTCGAAGATGGGCCGGAGCACGTTCAGCACGTCCTCTGGCTC 44663 ||| || || ||| || ||| |||| || || | | | | | ||||| | ||| Sbjct 31158 CATCGACTTCGCGCCACGGTCGTAGATCGGGCGAATGATTTCGATGATCTCCTCAGCCTC 31099 Query 44664 GATGTCGCGGGCGAGGCGGTTCCGGCCGAGACCATCCGTGATTTTATCCAGCCCCTTCTT 44723 ||| |||||||||||||| || || ||||| || | ||| || | || ||||| || Sbjct 31098 GATCTCGCGGGCGAGGCGATTGCGCCCGAGCGTGTCAGCGATCTTGTTGAGACCCTT-TT 31040 Query 44724 CG-----CTTCCACGAAGCTCATTTTCCCCTGAGCCTTCAGGTTATCAACGTAGGCGTCG 44778 || ||||||||| | ||||| | ||| ||| | | || ||| | ||| Sbjct 31039 CGGTCTCCTTCCACGAGGGC---TTTCCGGCGTCCCTG-AGGGCAGCGACATAGCCTTCG 30984 Query 44779 AACAGGTCGCCAACGGTGCCCGGCCGGCTGTCACCGCCTGCCACCTTGATCGAGGCACCC 44838 ||||| ||| | || ||||| || || |||| | || | |||||| ||| Sbjct 30983 AACAGATCGGCGACCGTGCCGGGGCGCGTGTCGGTG---GCGATCTTGATGCTCCGGCCC 30927 Query 44839 TTGTTGATGGCCGTGGAGAAGTCGCGGCCGAACACCTCGCGGGCGCTCGCCAGCGTCATG 44898 || | |||| | || |||||||| ||| | ||| || || || |||| ||| Sbjct 30926 TTCTGGATGACGTCGGCAAAGTCGCGCTTGAAGATCTCACGCGCTTGAGCGAGCGACATC 30867 Query 44899 TGGGGGTAGTCGCCCATCTTCGAGAGGGTGCGCTTATTGTCGCGCCACTGCTGCGCGTAC 44958 || ||| |||| | |||| |||||||||| ||||||||| |||||||| | Sbjct 30866 GACGGATAGGCGCCTAGCTTCTTCTTGGTGCGCTTACCGTCGCGCCATTGCTGCGCCATC 30807 Query 44959 CACGTCGTCG-TGACGCGGGTAGGCATGGGCTTGATGATGAGCACGAGGCGGCCGACGCC 45017 || |||| || ||||||| | ||||||||||||| | ||| ||||| |||||| ||| Sbjct 30806 CA-GTCGGCGGTGACGCGCTTCGGCATGGGCTTGAGAACGAGGACGAGACGGCCGGTGCC 30748 Query 45018 GCGCCCTTCACCATCGGCCAGTGTGGCCTGCTTCCGGCTCTTCTCAACCCGTTTGA 45073 ||| ||||| |||||||| || | |||||||| ||||| |||| || || |||| Sbjct 30747 GCGTCCTTCTCCATCGGCGAGGTTTTCCTGCTTCTGGCTCATCTCGACGCGCTTGA 30692 >seq1134 Length=45677 Score = 100 bits (110), Expect = 1e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 36097 CTGTTCGGCAAGGTCCGCACCGGCCGCGTCCGCGTCCTGTTCGGCTCCACGGCTAAGATG 36156 ||||||||| | || ||| ||||| |||||| ||||| ||||||| | | | ||| Sbjct 5467 CTGTTCGGCGACGTGCGCGCCGGCAAGGTCCGCTTCCTGATCGGCTCGTCCGACACCATG 5526 Query 36157 GGTGCCGGCATGAACGTGCAAAACAGGCTGGTGGCTCTCCACCACCTCGACGCACCATGG 36216 || ||||| | || | ||| | ||| ||| || ||||||||||||| || ||| Sbjct 5527 GGCACCGGCGTTAATGCGCAGCTGCGCCTGAAGGCGCTGCACCACCTCGACGTGCCCTGG 5586 Query 36217 CGCCCGTCTGACCTCGAACAGCGCGAGGGCCGCATCATCCGTCAGGGTAA 36266 | ||||| | |||| |||||||||||||||||| | || ||||| || Sbjct 5587 CTGCCGTCGCAGATCGAGCAGCGCGAGGGCCGCATCGTGCGCCAGGGCAA 5636 >seq1495 Length=154164 Score = 96.9 bits (106), Expect = 1e-15 Identities = 165/237 (70%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 36034 GGCATCCCAGAGGCCGAGATCGCCTTCATCCACGACGCGAACA---CCGAGCTTCAGAAA 36090 ||| | || | | |||||||||||||||| || ||| || | ||||| || Sbjct 35639 GGCGTACCGGCGTCCGAGATCGCCTTCATGCAGGACTTCAAGAAGTCCGAGGCC----AA 35584 Query 36091 GAAGAGC-TGTTCGGCAAGGTCCGCACCGGCCGCGTCCGCGTCCTGTTCGGCTCCACGGC 36149 | || || |||||||| | || ||| ||||| |||||| |||| |||||||| | | Sbjct 35583 GCAGCGCCTGTTCGGCGACGTGCGCGCCGGCAAGGTCCGCTTCCTCATCGGCTCCTCCGA 35524 Query 36150 TAAGATGGGTGCCGGCATGAACGTGCAAAACAGGCTGGTGGCTCTCCACCACCTCGACGC 36209 | ||||| | ||| |||||| || ||||| ||| ||||| |||||||||| Sbjct 35523 CACAATGGGCACTGGCGTGAACGCACAGCTTCGGCTGAAGGCGCTCCATCACCTCGACGT 35464 Query 36210 ACCATGGCGCCCGTCTGACCTCGAACAGCGCGAGGGCCGCATCATCCGTCAGGGTAA 36266 || |||| ||||| | ||| |||||||||||||| ||| || ||||| || Sbjct 35463 GCCGTGGCTGCCGTCGCAGATCGCGCAGCGCGAGGGCCGGATCGAGCGACAGGGCAA 35407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194159743773688