Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_018843.1 Length=103299 Score E Sequences producing significant alignments: (Bits) Value seq1191 105 4e-18 seq316 102 5e-17 seq812 98.7 7e-16 seq890 89.7 3e-13 seq827 82.4 5e-11 >seq1191 Length=688723 Score = 105 bits (116), Expect = 4e-18 Identities = 191/273 (70%), Gaps = 6/273 (2%) Strand=Plus/Minus Query 79549 ACGACCAACAATCGGATGGAGATGATGGGCGCCCTGATTGCGCTGGAGCGTCTGAAGTAC 79608 || |||||||| || ||||| |||||| || | ||||||||| |||||| | Sbjct 4937 ACCACCAACAACCGCATGGAATTGATGGCGGCGATCTCCGCGCTGGAGGCGCTGAAGAAA 4878 Query 79609 CCCTGCAACGT-GATC-CTGCATTCCGACAGCCAGTATCTAAAAAACGGCATGACGCTCT 79666 || || ||| |||| | || | |||||||||||| | | ||||| ||| || Sbjct 4877 CCGGCCAGCGTCGATCTCACCA--CGGACAGCCAGTATGTTCGTCAGGGCATCACGAGCT 4820 Query 79667 GGATGAAAGGCTGGAAGCGTAACGGATGGATCACGTCTGAGAAGAAGCCAGTCAAAAACG 79726 |||| | ||||||| | ||||| ||| |||| | || || ||||| || || || | Sbjct 4819 GGATTCACAACTGGAAGAGGAACGGCTGGCGCACGGCCGACAAAAAGCCGGTGAAGAATG 4760 Query 79727 TCGATCTCTGGAAACGTCTTGATGCGGC-CGCCAGCCGTCACAATGTCCGCTGGAAGTGG 79785 ||| || ||| | || || |||||||| | ||||| ||| | || |||||| | ||| Sbjct 4759 CCGAGCTTTGGCAGCGGCTGGATGCGGCGCTGAAGCCG-CACGAGGTGCGCTGGCACTGG 4701 Query 79786 GTTAAAGGTCATGCCGGTCATCGCGAGAACGAA 79818 | || || || ||||||||| |||||| ||| Sbjct 4700 ATCAAGGGCCACGCCGGTCATGCCGAGAATGAA 4668 >seq316 Length=8699 Score = 102 bits (112), Expect = 5e-17 Identities = 158/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 47733 GGCATTCCTGTCGGGCCAGGTCGTGGTTCCTCTGCCGGTTCTCTGGTGGCGTGGTGCATC 47792 ||||||||||| ||||| || || || ||| ||||||||| |||||||| | | || Sbjct 4196 GGCATTCCTGTGGGGCCGGGGCGCGGCTCCGGTGCCGGTTCGCTGGTGGCATATTCGCTC 4255 Query 47793 GGCATAACCAACGTCGATCCTATCCGTCACGGTCTTCTGTTTGAGCGTTTCATCAACCCT 47852 ||| ||| || ||||||| |||||| ||| || ||||| ||||| ||| |||| || Sbjct 4256 ACCATCACCGACCTCGATCCGATCCGTTTCGGCCTGCTGTTCGAGCGCTTCCTCAATCCC 4315 Query 47853 GAA--CGTCTCGACTTACCGGATGCGGATCTGGACTTCAGCCAGGCACGTCGTCATGAGG 47910 ||| ||| |||| | || || || | |||||| | |||| || ||| |||| Sbjct 4316 GAACGCGTGTCGA--TGCCCGACTTCGACATCGACTTCTGTCAGGACCGGCGTGGCGAGG 4373 Query 47911 TGATCGAGTATCTGAATGAACGCTATGGCGAAGATTACGTTGCC 47954 | ||||| || || | ||||| ||| ||| |||| ||| Sbjct 4374 TAATCGACTACGTGCAGCGCCGCTACGGCACCGATCACGTCGCC 4417 >seq812 Length=1388629 Score = 98.7 bits (108), Expect = 7e-16 Identities = 191/274 (70%), Gaps = 6/274 (2%) Strand=Plus/Minus Query 79548 CACGACCAACAATCGGATGGAGATGATGGGCGCCCTGATTGCGCTGGA-GCGTCTGAAGT 79606 ||| |||||||| |||||||| || ||| || | |||||||| ||| |||||| Sbjct 15987 CACCACCAACAACCGGATGGAATTGCTGGCGGCGATCTCCGCGCTGGAAGCG-CTGAAGA 15929 Query 79607 ACCCCTGCAACGT-GATCCTGCATTCCGACAGCCAGTATCTAAAAAACGGCATGACGCTC 79665 | || ||| ||| |||| |||| |||||||||||||| | | ||||| || | Sbjct 15928 AACCATGCTCCGTCGATC-TGCACACCGACAGCCAGTATGTGCGCCAGGGCATCACCGGC 15870 Query 79666 TGGATGAAAGGCTGGAAGCGTAACGGATGGATCACGTCTGAGAAGAAGCCAGTCAAAAAC 79725 ||||| | |||||||| ||||| ||| ||| | || |||||||| || || ||| Sbjct 15869 TGGATTCACGGCTGGAAAAAAAACGGCTGGCGCACCGCCGACAAGAAGCCGGTGAAGAAC 15810 Query 79726 GTCGATCTCTGGAAACGTCTTGATGCGGC-CGCCAGCCGTCACAATGTCCGCTGGAAGTG 79784 | || || ||| | | || || || || | ||||| || | || |||||| | || Sbjct 15809 ATGGACCTGTGGCAGCAGCTCGACGCCGCACTGAAGCCG-CATCAGGTGCGCTGGCACTG 15751 Query 79785 GGTTAAAGGTCATGCCGGTCATCGCGAGAACGAA 79818 ||| || || || ||||| || ||| |||||| Sbjct 15750 GGTCAAGGGCCACGCCGGCCACGACGACAACGAA 15717 >seq890 Length=125401 Score = 89.7 bits (98), Expect = 3e-13 Identities = 176/258 (68%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 79549 ACGACCAACAATCGGATGGAGATGATGGGCGCCCTGATTGCGCTGGAGCGTCTGAAGTAC 79608 ||||||||||| || |||||| |||||| ||| | || |||||||| ||||| Sbjct 106254 ACGACCAACAACCGCATGGAGTTGATGGCCGCGATCATGGCGCTGGAAGCCCTGAAACGG 106313 Query 79609 CCCTGCAACGTGATCCTGCATTCCGACAGCCAGTATCTAAAAAACGGCATGACGCTCTGG 79668 |||||||| || || || |||||||| | ||| | | | || || || ||| Sbjct 106314 CCCTGCAAGGTCGAGCTTCACACCGACAGCAAATATGTGATGCAGGGAATCACCGAGTGG 106373 Query 79669 ATGAAAGGCTGGAAGCGTAACGGATGGATCACGTCTGAGAAGAAGCCAGTCAAAAACGTC 79728 ||| ||||||||| ||| ||| | || | || || ||||| ||||| || | | Sbjct 106374 ATGCGCGGCTGGAAGGCGCGCGGCTGGCTGACCGCCGACAAAAAGCCGGTCAAGAATGCC 106433 Query 79729 GATCTCTGGAAACGTCTTGATG-CGGCCGCCAGCCGTCACAATGTCCGCTGGAAGTGGGT 79787 || || ||| | || || || | || ||||| | || ||| | ||| ||| ||||| Sbjct 106434 GACCTGTGGCAGCGGCTGGACGCCGCCCGCCTG-CGCCACGACGTCAAATGGCGCTGGGT 106492 Query 79788 TAAAGGTCATGCCGGTCA 79805 ||| ||||| || || || Sbjct 106493 TAAGGGTCACGCGGGCCA 106510 >seq827 Length=173386 Score = 82.4 bits (90), Expect = 5e-11 Identities = 171/252 (68%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 47674 TGGGCTTCTGTGGCTACTTCCTGATGGTGCGCGACCTGATGAATCACAGCCGTGAAAC-T 47732 |||| ||| |||||||||||||| ||| ||| | || || ||| | ||| | Sbjct 45713 TGGGTTTCCCCGGCTACTTCCTGATCGTGTCGGACTTCATCAAATGG-GCCAAGGAACAT 45771 Query 47733 GGCATTCCTGTCGGGCCAGGTCGTGGTTCCTCTGCCGGTTCTCTGGTGGCGTGGTGCATC 47792 ||||| || || ||||| || || || || |||||||| ||||| || |||| | | Sbjct 45772 GGCATCCCGGTGGGGCCGGGGCGGGGCTCTGGCGCCGGTTCGCTGGTCGCCTGGTCCCTG 45831 Query 47793 GGCATAACCAACGTCGATCCTATCCGTCACGGTCTTCTGTTTGAGCGTTTCATCAACCCT 47852 ||| ||| | | || || | || ||| || ||||| ||||| ||| | ||||| Sbjct 45832 ACCATCACCGATCTTGACCCCCTGCGGTTCGGCCTGCTGTTCGAGCGCTTCCTGAACCCG 45891 Query 47853 GAACGTCTCGACTTACCGGATGCGGATCTGGACTTCAGCCAGGCACGTCGTCATGAGGTG 47912 ||||| || | | || || || | |||||| |||||| || || | |||||| Sbjct 45892 GAACGGGTCTCCATGCCCGACTTCGACATCGACTTCTGCCAGGAGCGGCGGGAAGAGGTG 45951 Query 47913 ATCGAGTATCTG 47924 ||||| ||| || Sbjct 45952 ATCGACTATGTG 45963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330425963317140