Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq890 93.3 5e-14 seq743 86.0 7e-12 >seq890 Length=125401 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 39638 CATCGTTTCCGCATGGAACCCTGTTGATCTGGATGATATGGCTCTGCGTCCGTGTCACTG 39697 |||||| ||| |||||||| | || |||| || ||||| |||| ||||| ||||| Sbjct 47395 CATCGTCAGCGCCTGGAACCCGGCGGACGTGGACGACATGGCCCTGCCGCCGTGCCACTG 47336 Query 39698 TTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCAGT 39757 | ||||||||| |||| |||| ||||| ||| |||||||||| | Sbjct 47335 CCTGTTCCAGTTCTTCGTCGCAGACGGAAAACTCAGCTGCCAGCTGTATCAGCGTAGCGC 47276 Query 39758 TGATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCTGAC 39808 || ||||| | || |||||||||| |||||||||||||| || ||||| Sbjct 47275 CGACATCTTCCTGGGCGTGCCGTTCAACATCGCCTCCTACGCCCTGCTGAC 47225 >seq743 Length=263205 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 39629 TCGCGG--GATCATCGTTTCCGCATGGAACCCTGTTGATCTGGATGATATGGCTCTGCGT 39686 |||||| | | ||||| ||||||||| || | ||| | ||| | ||||| |||| Sbjct 73168 TCGCGGCGGCTGATCGTCAGCGCATGGAATCCGGCCGATGTCGATCACATGGCGCTGCCG 73109 Query 39687 CCGTGTCACTGTTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTAT 39746 || || || || | ||||||||| ||| ||||| ||||| || ||| ||| Sbjct 73108 CCATGCCATTGCCTGTTCCAGTTCTACGTCGCGAACGGCAAACTCTCGTGCCAGCTCTAT 73049 Query 39747 CAGCGTTCAGTTGATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCTG 39806 |||||||| | || || || | || |||||||||| ||||| ||||| || || ||| Sbjct 73048 CAGCGTTCGGCCGACGTGTTTCTCGGCGTGCCGTTCAACATCGCGTCCTATGCGCTGCTG 72989 Query 39807 ACGCATATTATCGC 39820 ||| || ||||| Sbjct 72988 ACGATGATGATCGC 72975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570078917946120