Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_019485.1 Length=59080 Score E Sequences producing significant alignments: (Bits) Value seq1008 141 4e-29 seq1007 141 4e-29 >seq1008 Length=53843 Score = 141 bits (156), Expect = 4e-29 Identities = 220/307 (72%), Gaps = 13/307 (4%) Strand=Plus/Minus Query 43727 TCAGAGTCAAAATCCATGGATTCACGGGAGAATTCATAGAAGAAACCCATCTTATGCATG 43786 || ||||| ||||||| |||||| ||| ||| || |||||||| || | ||| || || Sbjct 21294 TCCGAGTCGAAATCCAGGGATTCCTGGGTGAACTCGTAGAAGAAGCCGAACTTGTGGATC 21235 Query 43787 GAGCCTTCAATAACTTTACGGGTGAAACCAACACGGTTAACACGACCACCGGTTTCAGAC 43846 || |||||| ||||||||| || |||||||| ||||| |||||| |||| ||| Sbjct 21234 GAACCTTCACGGGAAAGACGGGTGAAGCCGACACGGTTCACACGGCCACCGTTTTCGGAC 21175 Query 43847 AGGGTAGGCAGTTTGCTTGAGATAGTACCTACGTCA--CGACTTGAACCATAGATATTAC 43904 || || || ||| | ||| | || ||||| ||| |||||||||| ||| | Sbjct 21174 AGCACCGGAAGCTTGGAGGTGATGGAGCCAACGTCCTTCGAG--GAACCATAGAGATTGC 21117 Query 43905 CATTAGCGTACTGTG-CGCCTTTAGCATCAATACCCTGATCGTTGACGTTCAG---ATCG 43960 |||| || | ||| |||| ||| || |||||||| ||||||||||| | |||| Sbjct 21116 CATTGGCAATC-GTGACGCCGGAAGCGTCGATACCCTGGTCGTTGACGTTGCGTGCATCG 21058 Query 43961 CTCAGTAAAGGCATATAGTGATAAGCCTTAATAGTCTTACCAAAATGCTTAGGCATGTT- 44019 || | ||||| ||| | || |||| || ||||| || ||||||| |||||||| Sbjct 21057 ---AGCAGAGGCACATATTCATGCACCTTGATCGTCTTGCCGTAATGCTTCGGCATGTTG 21001 Query 44020 ACGGACG 44026 |||| || Sbjct 21000 ACGGTCG 20994 >seq1007 Length=53843 Score = 141 bits (156), Expect = 4e-29 Identities = 220/307 (72%), Gaps = 13/307 (4%) Strand=Plus/Minus Query 43727 TCAGAGTCAAAATCCATGGATTCACGGGAGAATTCATAGAAGAAACCCATCTTATGCATG 43786 || ||||| ||||||| |||||| ||| ||| || |||||||| || | ||| || || Sbjct 21294 TCCGAGTCGAAATCCAGGGATTCCTGGGTGAACTCGTAGAAGAAGCCGAACTTGTGGATC 21235 Query 43787 GAGCCTTCAATAACTTTACGGGTGAAACCAACACGGTTAACACGACCACCGGTTTCAGAC 43846 || |||||| ||||||||| || |||||||| ||||| |||||| |||| ||| Sbjct 21234 GAACCTTCACGGGAAAGACGGGTGAAGCCGACACGGTTCACACGGCCACCGTTTTCGGAC 21175 Query 43847 AGGGTAGGCAGTTTGCTTGAGATAGTACCTACGTCA--CGACTTGAACCATAGATATTAC 43904 || || || ||| | ||| | || ||||| ||| |||||||||| ||| | Sbjct 21174 AGCACCGGAAGCTTGGAGGTGATGGAGCCAACGTCCTTCGAG--GAACCATAGAGATTGC 21117 Query 43905 CATTAGCGTACTGTG-CGCCTTTAGCATCAATACCCTGATCGTTGACGTTCAG---ATCG 43960 |||| || | ||| |||| ||| || |||||||| ||||||||||| | |||| Sbjct 21116 CATTGGCAATC-GTGACGCCGGAAGCGTCGATACCCTGGTCGTTGACGTTGCGTGCATCG 21058 Query 43961 CTCAGTAAAGGCATATAGTGATAAGCCTTAATAGTCTTACCAAAATGCTTAGGCATGTT- 44019 || | ||||| ||| | || |||| || ||||| || ||||||| |||||||| Sbjct 21057 ---AGCAGAGGCACATATTCATGCACCTTGATCGTCTTGCCGTAATGCTTCGGCATGTTG 21001 Query 44020 ACGGACG 44026 |||| || Sbjct 21000 ACGGTCG 20994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 188931036849596