Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq422 105 4e-17 seq1355 98.7 6e-15 >seq422 Length=7389 Score = 105 bits (116), Expect = 4e-17 Identities = 310/475 (65%), Gaps = 21/475 (4%) Strand=Plus/Plus Query 475788 GTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAG 475847 |||| || |||||||||| || || | || |||||| | |||| || | ||||| | Sbjct 5631 GTGTTAACCCTGATGAAGTAGTAGCTTTGGGTGCTGCTATTCAAGGAGGAGTATTATCGG 5690 Query 475848 GTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAG 475907 || || | | | | | || |||| | || |||||||| | ||||||| Sbjct 5691 GT------GATG------TTACTGACGTTTTACTATTAGATGTAACTCCTTTATCATTAG 5738 Query 475908 GTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCAT 475967 || ||||||| | ||||| | ||||| | || | |||||| || | || Sbjct 5739 GTATTGAAACTTTAGGAGGAGTAATGACGCCATTAATCTCTCGTAATACTACTGTTCCTA 5798 Query 475968 GCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAA 476027 ||||| ||| |||| ||||| ||| | || |||||| | |||| || Sbjct 5799 CTAAAAAGTCACAAGTTTTTTCAACTGCTGAAGACAATCAACCCGCTGTTGATATTAGTG 5858 Query 476028 TCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTG 476087 | || |||| ||| | | | ||||||||||| | ||| || ||| | | Sbjct 5859 TTTTACAAGGAGAACGTCCACTAGCTAAAGATAATCATTCACTGGGTCGTTTCCAATTAA 5918 Query 476088 AAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATG 476147 ||||| || || || ||||| ||||| ||||||||||||||||||||||| |||| Sbjct 5919 GTGGTATCGAACCAGCACCAAGAGGTGTTCCACAAATTGAAGTTACTTTTGATATCGATG 5978 Query 476148 CAAATGGTATTCTTAATGTTACTGCTTGTGAT---AAATCTAGTAACAAGAGTAAAAATA 476204 ||||||||| | ||||| |||| ||| ||| ||| || |||| ||||| | Sbjct 5979 TTAATGGTATTGTATCTGTTAGTGCTAAAGATCTAAAAACTAATA--AAGAACAAAAA-A 6035 Query 476205 TAACTATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATTCAACGTATGGT 476259 | |||||| | |||| |||||| || | | |||| ||||| || ||||| Sbjct 6036 TTACTATT---AGCAATAGTGGTACTTTAAGTAAAGACGAAATTGAAAAAATGGT 6087 Score = 95.1 bits (104), Expect = 8e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| ||||||||||| || || ||||| || |||||| |||| |||||| |||| Sbjct 4964 GCAGTTATTACTGTTCCTGCTTACTTTAACAATGAACAACGTGAAGCTACTAAAAATGCA 5023 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 |||| |||||||| | || || | | |||||||| |||||||| || || || | Sbjct 5024 GGAATTATTGCAGGATTAAAAGTAGAAAGAATTATTAACGAACCAACTGCTGCTGCCATC 5083 Query 474857 GCTTATGGTCTTGATAA 474873 ||||||||| | || || Sbjct 5084 GCTTATGGTTTAGACAA 5100 >seq1355 Length=20583 Score = 98.7 bits (108), Expect = 6e-15 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 297309 TCGTGTTACCGGTGTTTTAGATTGTTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAAT 297368 |||||| | | ||| || |||||||||||||| || || || ||||| | | ||| | Sbjct 16187 TCGTGTGCCTGATGTGTTTGATTGTTGGTTTGAGTCTGGCTCGATGCCGTTCGCGCAAGT 16246 Query 297369 TCATTATCCTTTTGAAAATTCCGAAATTTTAGACACTTCACAAGATTATATTGCAGATTT 297428 ||| ||||| ||||||||| ||| || || | || ||| ||| ||||| Sbjct 16247 TCACTATCCGTTTGAAAATAAAGAATGGTTCGAGA------AAAATTTCCCTGCGGATTT 16300 Query 297429 TATAACAGAATCAATTGATCAAACAAGAGGTTGGTTTTATACTTTATTAGTTCTTTCTAC 297488 ||| || |||| || | ||||||||||| ||||| ||||| | || || ||||| || Sbjct 16301 TATCACTGAATATATAGCACAAACAAGAGGATGGTTCTATACGCTTTTTGTGCTTTCCAC 16360 Query 297489 AGCTATATTTAACA 297502 ||| ||||| ||| Sbjct 16361 TGCTTTATTTGACA 16374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268114900616852