Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq1063 93.3 5e-14 seq1155 84.2 2e-11 seq827 82.4 8e-11 >seq1063 Length=63050 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 13712 CGCGGATGTAATTCAGTGGTAGAATGTCAGCCTTCCAAGCTGAACGTCAGGGGTTCGAGT 13771 ||||| |||| ||||| ||||||| |||||| | |||||||||| ||||||||||||| | Sbjct 34115 CGCGGGTGTAGTTCAGAGGTAGAACGTCAGCTTCCCAAGCTGAATGTCAGGGGTTCGATT 34174 Query 13772 CCCCTTATCCGCTCCA 13787 ||||| | |||||||| Sbjct 34175 CCCCTCACCCGCTCCA 34190 >seq1155 Length=1012 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 157690 CGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAA 157749 |||| ||| || ||||||||||| ||| | | ||||||| | | |||||||||||||||| Sbjct 439 CGGGATGTGGCTCAGCTTGGTAGAGCGCTCGGTTTGGGACCGAGAGGTCGCAGGTTCGAA 498 Query 157750 TCCTGTCACCCCGAC--TTATCAAA 157772 ||||||| |||||| |||| ||| Sbjct 499 TCCTGTCTTCCCGACCATTATTAAA 523 >seq827 Length=173386 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 157690 CGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAA 157749 |||||||||||||||| ||||||||| || ||||||| || ||||| ||||||||| Sbjct 172452 CGGGGTGTAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGGAGGTTCGAA 172511 Query 157750 TCCTGTCACCCCGAC 157764 |||| || ||||||| Sbjct 172512 TCCTCTCGCCCCGAC 172526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547736936586840