Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_020848.1 Length=76705 Score E Sequences producing significant alignments: (Bits) Value seq1008 91.5 7e-14 seq1007 91.5 7e-14 >seq1008 Length=53843 Score = 91.5 bits (100), Expect = 7e-14 Identities = 353/549 (64%), Gaps = 18/549 (3%) Strand=Plus/Minus Query 42590 GAGCAACAGATTTGATTAGAGCTAGACGCTCTGGACGAAGAATCATTGAGCCGTAGTACC 42649 ||||||| | ||||| ||| | | || || ||||| ||| |||||||||||| Sbjct 22058 GAGCAACGGTCTTGATGAGACCCTGGCGTTCCGGACGCTTGTTCAGGAAGCCGTAGTACC 21999 Query 42650 ATTTAATGCTCATGAAGCCTGTTTCGCCGTATGGGTCGTGCTTATCGGCAGTCTCTTTAC 42709 | || ||| | |||||| ||||| ||||| || |||| || || || || || | Sbjct 21998 ACTTGATGGACGAGAAGCCGGTTTCACCGTAAGGATCGTTACGGTCTGCGGTTTCGTTGC 21939 Query 42710 CCGGCTTCTTG-TGAGTGATCTTGAACTTCACGCCGTTACCGTCAGTTTGGAAACCGATA 42768 ||||| ||||| |||| ||| || | |||||| || || || || ||||||||||| Sbjct 21938 CCGGCATCTTGGTGAG-GATGTTCATCTTCACCGACTTGCCATCGGTCTGGAAACCGATC 21880 Query 42769 GTAGTGAAGGCACCTTGACCAATTACTAGAAGTGGGAATACGTCGTA-CGAAC--CACCA 42825 || | ||| | | ||| || | ||||| ||||| || || | | ||| Sbjct 21879 GTGGACCAGGAGTCGTCACCCGAGACGTACATCGGGAAGACGTCATAGCGTTCGTCGCCA 21820 Query 42826 ---------GTCTCACGGTAACCCGGGTTAGTACCAACAGCTGCACCAGCACCTGCCCAA 42876 ||| ||| |||| || || || ||||| ||||||| ||||||||||| Sbjct 21819 TTGACCGTGGTCGAGCGGAAACCAGGATTGGTTCCAACCACTGCACCGACACCTGCCCAA 21760 Query 42877 TGTTGCATCTCTTGCGCTACAACGATACGGAAGTGATCGATAGAACCAACTTCACCTTTC 42936 || |||| || | | | ||| ||||| ||| || | || | ||| || || Sbjct 21759 TGAAGCATTTCCGGAACCTGGATGATGCGGAAAGCATCAATGGTGCCGATTTCGCCATTG 21700 Query 42937 ATTAGAGTACCTGCAGCAGCGTAGTGCTTAGCTTC--AACGAACGCACGTTCACCGAAGT 42994 | | || || || || |||| |||| | || || ||| || | | ||||| Sbjct 21699 AGGATCGTGCCAGCGTCACCGTACTGCT--GGATCGGAATGAATGCCTGATTGCCGAACA 21642 Query 42995 AGTCAGTCATACGCTTAAGAGTAGGTAGCATTTCAGAACCTACGAACATTACGTAGCCAC 43054 || |||| | ||| || ||| | || |||||| || || |||| | | | || Sbjct 21641 GATCCTTCATGCCCTTGAGCAGAGGAACCAGTTCAGAGCCGACATACATGATGCGGGCAG 21582 Query 43055 CATCGATTACTTTAGTATCGATCATACGAGAACCAGAGATGATCTTCGTTTGACGTGGAG 43114 || | || |||||||||| ||| || || | ||||| ||| || || || | Sbjct 21581 CAGGCAGCGTCTTGGTATCGATCAGACGCGAGCCGGTGATGACCTTGGTATGCTTCGGGG 21522 Query 43115 TACGGTTGT 43123 ||||||||| Sbjct 21521 TACGGTTGT 21513 >seq1007 Length=53843 Score = 91.5 bits (100), Expect = 7e-14 Identities = 353/549 (64%), Gaps = 18/549 (3%) Strand=Plus/Minus Query 42590 GAGCAACAGATTTGATTAGAGCTAGACGCTCTGGACGAAGAATCATTGAGCCGTAGTACC 42649 ||||||| | ||||| ||| | | || || ||||| ||| |||||||||||| Sbjct 22058 GAGCAACGGTCTTGATGAGACCCTGGCGTTCCGGACGCTTGTTCAGGAAGCCGTAGTACC 21999 Query 42650 ATTTAATGCTCATGAAGCCTGTTTCGCCGTATGGGTCGTGCTTATCGGCAGTCTCTTTAC 42709 | || ||| | |||||| ||||| ||||| || |||| || || || || || | Sbjct 21998 ACTTGATGGACGAGAAGCCGGTTTCACCGTAAGGATCGTTACGGTCTGCGGTTTCGTTGC 21939 Query 42710 CCGGCTTCTTG-TGAGTGATCTTGAACTTCACGCCGTTACCGTCAGTTTGGAAACCGATA 42768 ||||| ||||| |||| ||| || | |||||| || || || || ||||||||||| Sbjct 21938 CCGGCATCTTGGTGAG-GATGTTCATCTTCACCGACTTGCCATCGGTCTGGAAACCGATC 21880 Query 42769 GTAGTGAAGGCACCTTGACCAATTACTAGAAGTGGGAATACGTCGTA-CGAAC--CACCA 42825 || | ||| | | ||| || | ||||| ||||| || || | | ||| Sbjct 21879 GTGGACCAGGAGTCGTCACCCGAGACGTACATCGGGAAGACGTCATAGCGTTCGTCGCCA 21820 Query 42826 ---------GTCTCACGGTAACCCGGGTTAGTACCAACAGCTGCACCAGCACCTGCCCAA 42876 ||| ||| |||| || || || ||||| ||||||| ||||||||||| Sbjct 21819 TTGACCGTGGTCGAGCGGAAACCAGGATTGGTTCCAACCACTGCACCGACACCTGCCCAA 21760 Query 42877 TGTTGCATCTCTTGCGCTACAACGATACGGAAGTGATCGATAGAACCAACTTCACCTTTC 42936 || |||| || | | | ||| ||||| ||| || | || | ||| || || Sbjct 21759 TGAAGCATTTCCGGAACCTGGATGATGCGGAAAGCATCAATGGTGCCGATTTCGCCATTG 21700 Query 42937 ATTAGAGTACCTGCAGCAGCGTAGTGCTTAGCTTC--AACGAACGCACGTTCACCGAAGT 42994 | | || || || || |||| |||| | || || ||| || | | ||||| Sbjct 21699 AGGATCGTGCCAGCGTCACCGTACTGCT--GGATCGGAATGAATGCCTGATTGCCGAACA 21642 Query 42995 AGTCAGTCATACGCTTAAGAGTAGGTAGCATTTCAGAACCTACGAACATTACGTAGCCAC 43054 || |||| | ||| || ||| | || |||||| || || |||| | | | || Sbjct 21641 GATCCTTCATGCCCTTGAGCAGAGGAACCAGTTCAGAGCCGACATACATGATGCGGGCAG 21582 Query 43055 CATCGATTACTTTAGTATCGATCATACGAGAACCAGAGATGATCTTCGTTTGACGTGGAG 43114 || | || |||||||||| ||| || || | ||||| ||| || || || | Sbjct 21581 CAGGCAGCGTCTTGGTATCGATCAGACGCGAGCCGGTGATGACCTTGGTATGCTTCGGGG 21522 Query 43115 TACGGTTGT 43123 ||||||||| Sbjct 21521 TACGGTTGT 21513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 245326718028974