Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq890 91.5 2e-13 seq1300 87.8 2e-12 seq966 87.8 2e-12 >seq890 Length=125401 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/82 (87%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 53484 GCGGAGAGGGTGAGATTCGAACTCACGGA-GGCTTTCACC-TCGCTGGTTTTCAAGACCA 53541 ||||| |||| ||||||||| |||||| |||| ||||| ||||||||||||||||||| Sbjct 24467 GCGGAAGCGGTGGGATTCGAACCCACGGACGGCTCTCACCGTCGCTGGTTTTCAAGACCA 24526 Query 53542 GAGCCATAAACCACTCGACCAC 53563 | ||| ||||||||||| |||| Sbjct 24527 GTGCCTTAAACCACTCGGCCAC 24548 >seq1300 Length=673 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 53750 ACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTACCAACTGAGCTAATT 53809 ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 89 ACGGAGTCGAACCGACGACATCCTGCTTGCAAAGCAGGCGCTCTACCAACTGAGCTATGG 148 Query 53810 CCCCA-ATCGGGGTG 53823 ||||| || ||||| Sbjct 149 CCCCATCTCAGGGTG 163 >seq966 Length=90452 Score = 87.8 bits (96), Expect = 2e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 53750 ACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTACCAACTGAGCTAATT 53809 ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 90365 ACGGAGTCGAACCGACGACATCCTGCTTGCAAAGCAGGCGCTCTACCAACTGAGCTATGG 90306 Query 53810 CCCCAATC 53817 ||||| || Sbjct 90305 CCCCATTC 90298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665481930298680