Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq1300 87.8 2e-12 seq966 87.8 2e-12 seq1494 86.0 7e-12 seq733 84.2 2e-11 >seq1300 Length=673 Score = 87.8 bits (96), Expect = 2e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 18016 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGTCCG 18071 ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 145 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCGTCGGTTCGACTCCG 90 >seq966 Length=90452 Score = 87.8 bits (96), Expect = 2e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 18016 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGTCCG 18071 ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 90309 TAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCGTCGGTTCGACTCCG 90364 >seq1494 Length=1074632 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 18126 CATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAA 18185 |||||||| |||||||||||| ||||| ||||||||||||||| |||||| ||||| | Sbjct 181312 CATTCCTCGGTAGCTCAGCGGTAGAGCATTCGACTGTTAATCGAATGGTCGCTGGTTCGA 181371 Query 18186 ATCCTACCTGGGGAG 18200 |||| || |||||| Sbjct 181372 ATCCAGCCCGGGGAG 181386 >seq733 Length=265776 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 18008 CGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 18067 ||||| ||||||||||||||||||||| ||| | ||| ||| || ||||||||||||| Sbjct 182023 CGGGGCTTTAGCTCAGTTGGTAGAGCGCTTGCATGGCATGCAAGAGGTCAGCGGTTCGAC 181964 Query 18068 TCCGCTATTCTCCA 18081 ||||||| ||||| Sbjct 181963 TCCGCTAAGCTCCA 181950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561237483615600