Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq827 176 1e-39 seq316 163 9e-36 seq998 158 4e-34 seq811 152 2e-32 >seq827 Length=173386 Score = 176 bits (194), Expect = 1e-39 Identities = 226/306 (74%), Gaps = 13/306 (4%) Strand=Plus/Minus Query 40430 GATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGG--TG-ACGTACTGGATCACCTCGCC 40486 ||||||||||||| ||| ||||| | ||| || || || | ||||||||| | Sbjct 45999 GATCTGCGCGACCCGGTCCTTGCCGTAGT---GGGCCTGCACATAGTCGATCACCTCTTC 45943 Query 40487 ACGACGC--CGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTC 40544 || ||| | | || |||||||||||||| ||||||||||| || || || |||||| Sbjct 45942 CCGCCGCTCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATGGAGACCCGTTCCGGGTTC 45885 Query 40545 AGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACG 40604 ||||| |||||||| | || ||| | ||| ||||| || |||||||| ||| Sbjct 45884 AGGAAGCGCTCGAACAGCAGGCCGAACCGCAGGGGGTCAAGATCGGTGATGGTCAGGGAC 45825 Query 40605 TAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCC 40664 ||||||||||||||||||| ||||||| ||||| || || ||| || ||| | ||| Sbjct 45824 CAGGCGACCAGCGAACCGGCGCCAGAGCCCCGCCCCGGCCCCACCGGGATGCCATGTTCC 45765 Query 40665 TTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCAT---CTGG 40721 || ||||| ||||||||||| |||| |||||||| ||||| ||||| |||| Sbjct 45764 TTGGCCCATTTGATGAAGTCCGACACGATCAGGAAGTAGCCGGGGAAACCCATCTGCTGG 45705 Query 40722 ATGATC 40727 |||||| Sbjct 45704 ATGATC 45699 Score = 105 bits (116), Expect = 2e-18 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 39557 CTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCAT 39616 |||||||||||||||||| ||||| || |||||||| | ||| ||| |||| || |||| Sbjct 46827 CTTCTTCTTGCCCATCGCGCGGCGCAGAAGGTCGGCTTCACCCAGGCTGTAGCCCGCCAG 46768 Query 39617 GACCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGATGA 39657 || || || | |||| ||||||||||||||||||||||| Sbjct 46767 GATTTGGGCGATCTTCATCACCTGCTCCTGGTAGATGATGA 46727 >seq316 Length=8699 Score = 163 bits (180), Expect = 9e-36 Identities = 282/404 (70%), Gaps = 12/404 (3%) Strand=Plus/Minus Query 40337 CTTGGTCAGCTTCTCGCCGACCTGGA---AGGGCTTGTCCAGCACGCGGGCTGCGTCCTT 40393 |||||||||||| ||| ||||| | ||| | | || ||| ||| | |||| Sbjct 4516 CTTGGTCAGCTTGTCG---ACCTGCCCATACGGCATCTGCAACACCCGGCCGACGTCGCG 4460 Query 40394 CATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCC 40453 || | || |||||||| | | |||| | || |||||| ||||| | |||| || Sbjct 4459 CAGCACGCCGCGCGCCTGCAACGTTCCGAAGGTGATGATCTGGGCGACGTGATCGGTGCC 4400 Query 40454 GTACTTCCGGGTGACGTACTGGATCACCTCGCCACGACG--CCGGTCATCGAAGTCGATG 40511 ||| || ||||| | ||| ||||||||||| || || | || |||||||||| Sbjct 4399 GTAGCGGCGCTGCACGTAGTCGATTACCTCGCCACGCCGGTCCTGACA--GAAGTCGATG 4342 Query 40512 TCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGTGC 40571 |||| |||||||| |||||||| ||||| || ||||| |||||||| | || ||| Sbjct 4341 TCGAAGTCGGGCATCGACACGCGTTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGAAA 4282 Query 40572 TCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAG 40631 | ||| |||||||||||||| ||| || || |||||||||||||| | ||| Sbjct 4281 CGGATCGGATCGAGGTCGGTGATGGTGAGCGAATATGCCACCAGCGAACCGGCACCGGAG 4222 Query 40632 CCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACG 40691 || ||||| || || || | ||| | | |||| ||||| ||||||||| | ||| Sbjct 4221 CCGCGCCCCGGCCCCACAGGAATGCCCTGCGCCTTGGCCCACTTGATGAAGTCGGACACG 4162 Query 40692 ACGAGGAAGTACGACGGGA-AGCCCATCTGGATGATCATGTCGA 40734 | |||||||| | ||| | | |||| || |||| | ||||| Sbjct 4161 ATCAGGAAGTA-GCCGGAATATTTCATCCGGGTGATGACGTCGA 4119 Score = 107 bits (118), Expect = 6e-19 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39559 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGA 39618 |||||||||||||||| ||||| ||||||||||| | ||||| | || |||||||||| Sbjct 5249 TCTTCTTGCCCATCGCGCGGCGCAGCAGGTCGGCGTCGCCGAGCGAATAGCCGGCCATGA 5190 Query 39619 CCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGATGAGCTGGAAGGTCGGGTCCAGGA 39678 ||||||| | || | |||||| ||||| |||||||||| |||||| | ||||| Sbjct 5189 CCTGCGCGATCTGCATCACCTGTTCCTGATAGATGATGACGCCGAAGGTTTCCTTCAGGA 5130 Query 39679 TC 39680 || Sbjct 5129 TC 5128 >seq998 Length=1052685 Score = 158 bits (174), Expect = 4e-34 Identities = 179/238 (75%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 40467 ACGTACTGGATCACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCA 40524 ||||| |||||||||||||| || || || | || |||||||||||||| || |||| Sbjct 531713 ACGTAATGGATCACCTCGCCGCGGCGATCCTGACA--GAAGTCGATGTCGAAGTCCGGCA 531656 Query 40525 TGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGA 40584 | |||||||||||||| || || || || ||||| | || ||| |||||| |||| Sbjct 531655 TCGACACGCGCTCGGGATTGAGAAAGCGTTCGAACAGCAGGCCGAAGCGCAGCGGATCGA 531596 Query 40585 GGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGC 40644 |||||||||| || | ||||| |||||||| || || | ||||| ||||| || | Sbjct 531595 GGTCGGTGATGGTCAGCGCATAGGCCACCAGCGAGCCCGCGCCGGAGCCGCGCCCCGGCC 531536 Query 40645 CGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTA 40702 ||||| | ||| | | |||||||||| ||||||||| | |||| |||||||| Sbjct 531535 CGACCGGAATGCCCTGCGCCTTCGCCCACTTGATGAAGTCGGACACGATCAGGAAGTA 531478 Score = 89.7 bits (98), Expect = 2e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39559 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGA 39618 |||||||||||||||| ||||| | ||||| |||| ||||| | || || ||||| | Sbjct 532576 TCTTCTTGCCCATCGCGCGGCGTAAGAGGTCCGCCTCGCCGAGCGAATAACCCGCCATCA 532517 Query 39619 CCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGATGAGCTGGAAGGTCGGGTCCAGGA 39678 ||||||| | || | |||||| ||||| |||||||||| ||| ||| | ||||| Sbjct 532516 CCTGCGCGATCTGCATCACCTGTTCCTGATAGATGATGACGCCGAACGTCTCTTTCAGGA 532457 Query 39679 TC 39680 || Sbjct 532456 TC 532455 >seq811 Length=194255 Score = 152 bits (168), Expect = 2e-32 Identities = 234/332 (70%), Gaps = 4/332 (1%) Strand=Plus/Plus Query 40418 TCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGAT 40477 |||| |||| |||||| || |||| || ||||||||| | || || |||| Sbjct 30626 TCCGAACGTGATGATCTGGGCTACCTGATCTCGCCCGTACTTTCCCTGCACATAGCGGAT 30685 Query 40478 CACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGC 40535 |||||| |||| || || | || ||||||||| |||| |||||||| || ||||| Sbjct 30686 CACCTCTTCACGGCGGTCCTGACA--GAAGTCGATATCGAAGTCGGGCATCGAAACGCGA 30743 Query 40536 TCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATC 40595 || ||||| ||||| || ||||| | || | | || || |||| ||| || ||| Sbjct 30744 TCCGGGTTGAGGAAGCGTTCGAAAAGCAGCGAGAACCGCAAAGGATCGACGTCAGTAATC 30803 Query 40596 CCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACG 40655 || | |||||||| ||||||||||| | ||||| || || || |||||| | | Sbjct 30804 GTCAGCGCATAGGCGACGAGCGAACCGGCACCCGAGCCACGGCCCGGCCCGACCGGAATG 30863 Query 40656 CCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCC 40715 || | | |||||||| ||| |||||||| |||| |||||||| |||||| | Sbjct 30864 CCATGGGCTTTCGCCCATTTGATAAAGTCCGCAACGATCAGGAAGTAGCCCGGGAACTTC 30923 Query 40716 ATCTGGATGATCATGTCGATCTCGTACTGGAG 40747 || || |||| ||| |||||||||| | ||| Sbjct 30924 ATGCGGGTGATGATGCCGATCTCGTATTCGAG 30955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163881882748132