Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq827 176 1e-39 seq316 163 9e-36 seq998 158 4e-34 seq811 156 1e-33 >seq827 Length=173386 Score = 176 bits (194), Expect = 1e-39 Identities = 226/306 (74%), Gaps = 13/306 (4%) Strand=Plus/Minus Query 40718 GATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGG--TG-ACGTACTGGATCACCTCGCC 40774 ||||||||||||| ||| ||||| | ||| || || || | ||||||||| | Sbjct 45999 GATCTGCGCGACCCGGTCCTTGCCGTAGT---GGGCCTGCACATAGTCGATCACCTCTTC 45943 Query 40775 ACGACGC--CGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTC 40832 || ||| | | || |||||||||||||| ||||||||||| || || || |||||| Sbjct 45942 CCGCCGCTCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATGGAGACCCGTTCCGGGTTC 45885 Query 40833 AGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACG 40892 ||||| |||||||| | || ||| | ||| ||||| || |||||||| ||| Sbjct 45884 AGGAAGCGCTCGAACAGCAGGCCGAACCGCAGGGGGTCAAGATCGGTGATGGTCAGGGAC 45825 Query 40893 TAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCC 40952 ||||||||||||||||||| ||||||| ||||| || || ||| || ||| | ||| Sbjct 45824 CAGGCGACCAGCGAACCGGCGCCAGAGCCCCGCCCCGGCCCCACCGGGATGCCATGTTCC 45765 Query 40953 TTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCAT---CTGG 41009 || ||||| ||||||||||| |||| |||||||| ||||| ||||| |||| Sbjct 45764 TTGGCCCATTTGATGAAGTCCGACACGATCAGGAAGTAGCCGGGGAAACCCATCTGCTGG 45705 Query 41010 ATGATC 41015 |||||| Sbjct 45704 ATGATC 45699 Score = 102 bits (112), Expect = 3e-17 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 39845 CTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCAT 39904 |||||||||||||||||| ||||| || |||||||| | ||| ||| |||| || |||| Sbjct 46827 CTTCTTCTTGCCCATCGCGCGGCGCAGAAGGTCGGCTTCACCCAGGCTGTAGCCCGCCAG 46768 Query 39905 GACCTGTGCAACCTTCTGCACTTGCTCCTGGTAGATGATGA 39945 || || || | |||| ||| ||||||||||||||||||| Sbjct 46767 GATTTGGGCGATCTTCATCACCTGCTCCTGGTAGATGATGA 46727 >seq316 Length=8699 Score = 163 bits (180), Expect = 9e-36 Identities = 282/404 (70%), Gaps = 12/404 (3%) Strand=Plus/Minus Query 40625 CTTGGTCAGCTTCTCGCCGACCTGGA---AGGGCTTGTCCAGCACGCGGGCTGCGTCCTT 40681 |||||||||||| ||| ||||| | ||| | | || ||| ||| | |||| Sbjct 4516 CTTGGTCAGCTTGTCG---ACCTGCCCATACGGCATCTGCAACACCCGGCCGACGTCGCG 4460 Query 40682 CATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCC 40741 || | || |||||||| | | |||| | || |||||| ||||| | |||| || Sbjct 4459 CAGCACGCCGCGCGCCTGCAACGTTCCGAAGGTGATGATCTGGGCGACGTGATCGGTGCC 4400 Query 40742 GTACTTCCGGGTGACGTACTGGATCACCTCGCCACGACG--CCGGTCATCGAAGTCGATG 40799 ||| || ||||| | ||| ||||||||||| || || | || |||||||||| Sbjct 4399 GTAGCGGCGCTGCACGTAGTCGATTACCTCGCCACGCCGGTCCTGACA--GAAGTCGATG 4342 Query 40800 TCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGC 40859 |||| |||||||| |||||||| ||||| || ||||| |||||||| | || ||| Sbjct 4341 TCGAAGTCGGGCATCGACACGCGTTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGAAA 4282 Query 40860 TCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAG 40919 | ||| |||||||||||||| ||| || || |||||||||||||| | ||| Sbjct 4281 CGGATCGGATCGAGGTCGGTGATGGTGAGCGAATATGCCACCAGCGAACCGGCACCGGAG 4222 Query 40920 CCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACG 40979 || ||||| || || || | ||| | | |||| ||||| ||||||||| | ||| Sbjct 4221 CCGCGCCCCGGCCCCACAGGAATGCCCTGCGCCTTGGCCCACTTGATGAAGTCGGACACG 4162 Query 40980 ACGAGGAAGTACGACGGGA-AGCCCATCTGGATGATCATGTCGA 41022 | |||||||| | ||| | | |||| || |||| | ||||| Sbjct 4161 ATCAGGAAGTA-GCCGGAATATTTCATCCGGGTGATGACGTCGA 4119 Score = 98.7 bits (108), Expect = 3e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39847 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGA 39906 |||||||||||||||| ||||| ||||||||||| | ||||| | || |||||||||| Sbjct 5249 TCTTCTTGCCCATCGCGCGGCGCAGCAGGTCGGCGTCGCCGAGCGAATAGCCGGCCATGA 5190 Query 39907 CCTGTGCAACCTTCTGCACTTGCTCCTGGTAGATGATGAGCTGGAAGGTCGGGTCCAGGA 39966 |||| || | || | ||| || ||||| |||||||||| |||||| | ||||| Sbjct 5189 CCTGCGCGATCTGCATCACCTGTTCCTGATAGATGATGACGCCGAAGGTTTCCTTCAGGA 5130 Query 39967 TC 39968 || Sbjct 5129 TC 5128 >seq998 Length=1052685 Score = 158 bits (174), Expect = 4e-34 Identities = 179/238 (75%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 40755 ACGTACTGGATCACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCA 40812 ||||| |||||||||||||| || || || | || |||||||||||||| || |||| Sbjct 531713 ACGTAATGGATCACCTCGCCGCGGCGATCCTGACA--GAAGTCGATGTCGAAGTCCGGCA 531656 Query 40813 TGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGA 40872 | |||||||||||||| || || || || ||||| | || ||| |||||| |||| Sbjct 531655 TCGACACGCGCTCGGGATTGAGAAAGCGTTCGAACAGCAGGCCGAAGCGCAGCGGATCGA 531596 Query 40873 GGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGC 40932 |||||||||| || | ||||| |||||||| || || | ||||| ||||| || | Sbjct 531595 GGTCGGTGATGGTCAGCGCATAGGCCACCAGCGAGCCCGCGCCGGAGCCGCGCCCCGGCC 531536 Query 40933 CGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTA 40990 ||||| | ||| | | |||||||||| ||||||||| | |||| |||||||| Sbjct 531535 CGACCGGAATGCCCTGCGCCTTCGCCCACTTGATGAAGTCGGACACGATCAGGAAGTA 531478 Score = 80.6 bits (88), Expect = 9e-11 Identities = 91/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39847 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGA 39906 |||||||||||||||| ||||| | ||||| |||| ||||| | || || ||||| | Sbjct 532576 TCTTCTTGCCCATCGCGCGGCGTAAGAGGTCCGCCTCGCCGAGCGAATAACCCGCCATCA 532517 Query 39907 CCTGTGCAACCTTCTGCACTTGCTCCTGGTAGATGATGAGCTGGAAGGTCGGGTCCAGGA 39966 |||| || | || | ||| || ||||| |||||||||| ||| ||| | ||||| Sbjct 532516 CCTGCGCGATCTGCATCACCTGTTCCTGATAGATGATGACGCCGAACGTCTCTTTCAGGA 532457 Query 39967 TC 39968 || Sbjct 532456 TC 532455 >seq811 Length=194255 Score = 156 bits (172), Expect = 1e-33 Identities = 235/332 (71%), Gaps = 4/332 (1%) Strand=Plus/Plus Query 40706 TCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGAT 40765 |||| |||| |||||| || |||| || ||||||||| | || || |||| Sbjct 30626 TCCGAACGTGATGATCTGGGCTACCTGATCTCGCCCGTACTTTCCCTGCACATAGCGGAT 30685 Query 40766 CACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGC 40823 |||||| |||| || || | || ||||||||| |||| |||||||| || ||||| Sbjct 30686 CACCTCTTCACGGCGGTCCTGACA--GAAGTCGATATCGAAGTCGGGCATCGAAACGCGA 30743 Query 40824 TCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATC 40883 || ||||| ||||| || ||||| | ||| | | || || |||| ||| || ||| Sbjct 30744 TCCGGGTTGAGGAAGCGTTCGAAAAGCAGCGAGAACCGCAAAGGATCGACGTCAGTAATC 30803 Query 40884 CCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACG 40943 || | |||||||| ||||||||||| | ||||| || || || |||||| | | Sbjct 30804 GTCAGCGCATAGGCGACGAGCGAACCGGCACCCGAGCCACGGCCCGGCCCGACCGGAATG 30863 Query 40944 CCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCC 41003 || | | |||||||| ||| |||||||| |||| |||||||| |||||| | Sbjct 30864 CCATGGGCTTTCGCCCATTTGATAAAGTCCGCAACGATCAGGAAGTAGCCCGGGAACTTC 30923 Query 41004 ATCTGGATGATCATGTCGATCTCGTACTGGAG 41035 || || |||| ||| |||||||||| | ||| Sbjct 30924 ATGCGGGTGATGATGCCGATCTCGTATTCGAG 30955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164841865659532