Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_021304.1
Length=51552
Score E
Sequences producing significant alignments: (Bits) Value
seq827 176 1e-39
seq316 163 9e-36
seq998 158 4e-34
seq811 156 1e-33
>seq827
Length=173386
Score = 176 bits (194), Expect = 1e-39
Identities = 226/306 (74%), Gaps = 13/306 (4%)
Strand=Plus/Minus
Query 40718 GATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGG--TG-ACGTACTGGATCACCTCGCC 40774
||||||||||||| ||| ||||| | ||| || || || | ||||||||| |
Sbjct 45999 GATCTGCGCGACCCGGTCCTTGCCGTAGT---GGGCCTGCACATAGTCGATCACCTCTTC 45943
Query 40775 ACGACGC--CGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTC 40832
|| ||| | | || |||||||||||||| ||||||||||| || || || ||||||
Sbjct 45942 CCGCCGCTCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATGGAGACCCGTTCCGGGTTC 45885
Query 40833 AGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACG 40892
||||| |||||||| | || ||| | ||| ||||| || |||||||| |||
Sbjct 45884 AGGAAGCGCTCGAACAGCAGGCCGAACCGCAGGGGGTCAAGATCGGTGATGGTCAGGGAC 45825
Query 40893 TAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCC 40952
||||||||||||||||||| ||||||| ||||| || || ||| || ||| | |||
Sbjct 45824 CAGGCGACCAGCGAACCGGCGCCAGAGCCCCGCCCCGGCCCCACCGGGATGCCATGTTCC 45765
Query 40953 TTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCAT---CTGG 41009
|| ||||| ||||||||||| |||| |||||||| ||||| ||||| ||||
Sbjct 45764 TTGGCCCATTTGATGAAGTCCGACACGATCAGGAAGTAGCCGGGGAAACCCATCTGCTGG 45705
Query 41010 ATGATC 41015
||||||
Sbjct 45704 ATGATC 45699
Score = 102 bits (112), Expect = 3e-17
Identities = 83/101 (82%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 39845 CTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCAT 39904
|||||||||||||||||| ||||| || |||||||| | ||| ||| |||| || ||||
Sbjct 46827 CTTCTTCTTGCCCATCGCGCGGCGCAGAAGGTCGGCTTCACCCAGGCTGTAGCCCGCCAG 46768
Query 39905 GACCTGTGCAACCTTCTGCACTTGCTCCTGGTAGATGATGA 39945
|| || || | |||| ||| |||||||||||||||||||
Sbjct 46767 GATTTGGGCGATCTTCATCACCTGCTCCTGGTAGATGATGA 46727
>seq316
Length=8699
Score = 163 bits (180), Expect = 9e-36
Identities = 282/404 (70%), Gaps = 12/404 (3%)
Strand=Plus/Minus
Query 40625 CTTGGTCAGCTTCTCGCCGACCTGGA---AGGGCTTGTCCAGCACGCGGGCTGCGTCCTT 40681
|||||||||||| ||| ||||| | ||| | | || ||| ||| | ||||
Sbjct 4516 CTTGGTCAGCTTGTCG---ACCTGCCCATACGGCATCTGCAACACCCGGCCGACGTCGCG 4460
Query 40682 CATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCC 40741
|| | || |||||||| | | |||| | || |||||| ||||| | |||| ||
Sbjct 4459 CAGCACGCCGCGCGCCTGCAACGTTCCGAAGGTGATGATCTGGGCGACGTGATCGGTGCC 4400
Query 40742 GTACTTCCGGGTGACGTACTGGATCACCTCGCCACGACG--CCGGTCATCGAAGTCGATG 40799
||| || ||||| | ||| ||||||||||| || || | || ||||||||||
Sbjct 4399 GTAGCGGCGCTGCACGTAGTCGATTACCTCGCCACGCCGGTCCTGACA--GAAGTCGATG 4342
Query 40800 TCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGC 40859
|||| |||||||| |||||||| ||||| || ||||| |||||||| | || |||
Sbjct 4341 TCGAAGTCGGGCATCGACACGCGTTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGAAA 4282
Query 40860 TCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAG 40919
| ||| |||||||||||||| ||| || || |||||||||||||| | |||
Sbjct 4281 CGGATCGGATCGAGGTCGGTGATGGTGAGCGAATATGCCACCAGCGAACCGGCACCGGAG 4222
Query 40920 CCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACG 40979
|| ||||| || || || | ||| | | |||| ||||| ||||||||| | |||
Sbjct 4221 CCGCGCCCCGGCCCCACAGGAATGCCCTGCGCCTTGGCCCACTTGATGAAGTCGGACACG 4162
Query 40980 ACGAGGAAGTACGACGGGA-AGCCCATCTGGATGATCATGTCGA 41022
| |||||||| | ||| | | |||| || |||| | |||||
Sbjct 4161 ATCAGGAAGTA-GCCGGAATATTTCATCCGGGTGATGACGTCGA 4119
Score = 98.7 bits (108), Expect = 3e-16
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 39847 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGA 39906
|||||||||||||||| ||||| ||||||||||| | ||||| | || ||||||||||
Sbjct 5249 TCTTCTTGCCCATCGCGCGGCGCAGCAGGTCGGCGTCGCCGAGCGAATAGCCGGCCATGA 5190
Query 39907 CCTGTGCAACCTTCTGCACTTGCTCCTGGTAGATGATGAGCTGGAAGGTCGGGTCCAGGA 39966
|||| || | || | ||| || ||||| |||||||||| |||||| | |||||
Sbjct 5189 CCTGCGCGATCTGCATCACCTGTTCCTGATAGATGATGACGCCGAAGGTTTCCTTCAGGA 5130
Query 39967 TC 39968
||
Sbjct 5129 TC 5128
>seq998
Length=1052685
Score = 158 bits (174), Expect = 4e-34
Identities = 179/238 (75%), Gaps = 4/238 (2%)
Strand=Plus/Minus
Query 40755 ACGTACTGGATCACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCA 40812
||||| |||||||||||||| || || || | || |||||||||||||| || ||||
Sbjct 531713 ACGTAATGGATCACCTCGCCGCGGCGATCCTGACA--GAAGTCGATGTCGAAGTCCGGCA 531656
Query 40813 TGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGA 40872
| |||||||||||||| || || || || ||||| | || ||| |||||| ||||
Sbjct 531655 TCGACACGCGCTCGGGATTGAGAAAGCGTTCGAACAGCAGGCCGAAGCGCAGCGGATCGA 531596
Query 40873 GGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGC 40932
|||||||||| || | ||||| |||||||| || || | ||||| ||||| || |
Sbjct 531595 GGTCGGTGATGGTCAGCGCATAGGCCACCAGCGAGCCCGCGCCGGAGCCGCGCCCCGGCC 531536
Query 40933 CGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTA 40990
||||| | ||| | | |||||||||| ||||||||| | |||| ||||||||
Sbjct 531535 CGACCGGAATGCCCTGCGCCTTCGCCCACTTGATGAAGTCGGACACGATCAGGAAGTA 531478
Score = 80.6 bits (88), Expect = 9e-11
Identities = 91/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 39847 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGA 39906
|||||||||||||||| ||||| | ||||| |||| ||||| | || || ||||| |
Sbjct 532576 TCTTCTTGCCCATCGCGCGGCGTAAGAGGTCCGCCTCGCCGAGCGAATAACCCGCCATCA 532517
Query 39907 CCTGTGCAACCTTCTGCACTTGCTCCTGGTAGATGATGAGCTGGAAGGTCGGGTCCAGGA 39966
|||| || | || | ||| || ||||| |||||||||| ||| ||| | |||||
Sbjct 532516 CCTGCGCGATCTGCATCACCTGTTCCTGATAGATGATGACGCCGAACGTCTCTTTCAGGA 532457
Query 39967 TC 39968
||
Sbjct 532456 TC 532455
>seq811
Length=194255
Score = 156 bits (172), Expect = 1e-33
Identities = 235/332 (71%), Gaps = 4/332 (1%)
Strand=Plus/Plus
Query 40706 TCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGAT 40765
|||| |||| |||||| || |||| || ||||||||| | || || ||||
Sbjct 30626 TCCGAACGTGATGATCTGGGCTACCTGATCTCGCCCGTACTTTCCCTGCACATAGCGGAT 30685
Query 40766 CACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGC 40823
|||||| |||| || || | || ||||||||| |||| |||||||| || |||||
Sbjct 30686 CACCTCTTCACGGCGGTCCTGACA--GAAGTCGATATCGAAGTCGGGCATCGAAACGCGA 30743
Query 40824 TCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATC 40883
|| ||||| ||||| || ||||| | ||| | | || || |||| ||| || |||
Sbjct 30744 TCCGGGTTGAGGAAGCGTTCGAAAAGCAGCGAGAACCGCAAAGGATCGACGTCAGTAATC 30803
Query 40884 CCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACG 40943
|| | |||||||| ||||||||||| | ||||| || || || |||||| | |
Sbjct 30804 GTCAGCGCATAGGCGACGAGCGAACCGGCACCCGAGCCACGGCCCGGCCCGACCGGAATG 30863
Query 40944 CCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCC 41003
|| | | |||||||| ||| |||||||| |||| |||||||| |||||| |
Sbjct 30864 CCATGGGCTTTCGCCCATTTGATAAAGTCCGCAACGATCAGGAAGTAGCCCGGGAACTTC 30923
Query 41004 ATCTGGATGATCATGTCGATCTCGTACTGGAG 41035
|| || |||| ||| |||||||||| | |||
Sbjct 30924 ATGCGGGTGATGATGCCGATCTCGTATTCGAG 30955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 164841865659532
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |