Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_021339.1
Length=51077
Score E
Sequences producing significant alignments: (Bits) Value
seq827 176 1e-39
seq316 158 4e-34
seq811 156 1e-33
seq998 154 5e-33
>seq827
Length=173386
Score = 176 bits (194), Expect = 1e-39
Identities = 226/306 (74%), Gaps = 13/306 (4%)
Strand=Plus/Minus
Query 40178 GATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGG--TG-ACGTACTGGATGACCTCGCC 40234
||||||||||||| ||| ||||| | ||| || || || | ||| ||||| |
Sbjct 45999 GATCTGCGCGACCCGGTCCTTGCCGTAGT---GGGCCTGCACATAGTCGATCACCTCTTC 45943
Query 40235 ACGACGC--CGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTC 40292
|| ||| | | || |||||||||||||| ||||||||||| || || || ||||||
Sbjct 45942 CCGCCGCTCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATGGAGACCCGTTCCGGGTTC 45885
Query 40293 AGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACG 40352
|||||||||||||| | || ||| | ||| ||||| || |||||||| |||
Sbjct 45884 AGGAAGCGCTCGAACAGCAGGCCGAACCGCAGGGGGTCAAGATCGGTGATGGTCAGGGAC 45825
Query 40353 TAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCC 40412
||||||||||||||||||| ||||||||||||| || || ||| || || | |||
Sbjct 45824 CAGGCGACCAGCGAACCGGCGCCAGAGCCCCGCCCCGGCCCCACCGGGATGCCATGTTCC 45765
Query 40413 TTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCAT---CTGG 40469
|| ||||| ||||||||||| |||| |||||||| ||||| ||||| ||||
Sbjct 45764 TTGGCCCATTTGATGAAGTCCGACACGATCAGGAAGTAGCCGGGGAAACCCATCTGCTGG 45705
Query 40470 ATGATC 40475
||||||
Sbjct 45704 ATGATC 45699
Score = 107 bits (118), Expect = 6e-19
Identities = 208/301 (69%), Gaps = 12/301 (4%)
Strand=Plus/Minus
Query 39109 ACTCGGCCGGGTAGTGCGTCTTCAACCACGCCGTGCGGTACGCGATGAGTCCGTACGCCG 39168
||||| |||| | | | ||||||||| |||| | ||| ||| || | || || |
Sbjct 47023 ACTCGACCGGATGATTGGCCTTCAACCAGCCCGTCTGAAACGAGATCAGCGCATAGGCGG 46964
Query 39169 CCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAAGGGGACCAGCACGTCCCACACTGC-C 39227
| | ||||| |||||||||| ||||||| || || | ||| || || | | | |
Sbjct 46963 CGGCGTGCGACTTGTTGAAGCCGTAGCCTGCAAACTTGGCCACCAGATCGAAGATGGAGC 46904
Query 39228 TGGATGGCACCGTCCGAGT-AGCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTC 39286
||| | || || | | | ||| ||| |||| ||||| |||| |||| |
Sbjct 46903 CGGACTGGGCC-TCGGGGACATCCTT-CTCCAGCGCGCCCTTGACGAAG----CGAAGGC 46850
Query 39287 CTTGG----CCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCT 39342
||| ||| |||| |||||||||||||||||| ||||| || |||||||| |
Sbjct 46849 GCTGGAAGTCCATCTCCTCCTTCTTCTTCTTGCCCATCGCGCGGCGCAGAAGGTCGGCTT 46790
Query 39343 GACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTCCTGGTAGATGA 39402
||||||| |||| || |||| || || || | |||| ||||||||||||||||||||
Sbjct 46789 CACCCAGGCTGTAGCCCGCCAGGATTTGGGCGATCTTCATCACCTGCTCCTGGTAGATGA 46730
Query 39403 T 39403
|
Sbjct 46729 T 46729
>seq316
Length=8699
Score = 158 bits (174), Expect = 4e-34
Identities = 283/405 (70%), Gaps = 14/405 (3%)
Strand=Plus/Minus
Query 40085 CTTGGTCAGCTTCTCGCCGACCTGGA---AGGGCTTGTCGAGCACGCGAGCCG-CGTCCT 40140
|||||||||||| ||| ||||| | ||| | | | ||| || |||| ||||
Sbjct 4516 CTTGGTCAGCTTGTCG---ACCTGCCCATACGGCATCTGCAACACCCG-GCCGACGTCGC 4461
Query 40141 TCATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCC 40200
|| | || |||||||| | | |||| | || |||||| ||||| | |||| |
Sbjct 4460 GCAGCACGCCGCGCGCCTGCAACGTTCCGAAGGTGATGATCTGGGCGACGTGATCGGTGC 4401
Query 40201 CGTACTTCCGGGTGACGTACTGGATGACCTCGCCACGACG--CCGGTCATCGAAGTCGAT 40258
|||| || ||||| | ||| ||||||||||| || || | || |||||||||
Sbjct 4400 CGTAGCGGCGCTGCACGTAGTCGATTACCTCGCCACGCCGGTCCTGACA--GAAGTCGAT 4343
Query 40259 GTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTG 40318
||||| |||||||| |||||||| ||||| || |||||||||||||| | || |||
Sbjct 4342 GTCGAAGTCGGGCATCGACACGCGTTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGAA 4283
Query 40319 CTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGA 40378
| ||| |||||||||||||| ||| || || |||||||||||||| | ||
Sbjct 4282 ACGGATCGGATCGAGGTCGGTGATGGTGAGCGAATATGCCACCAGCGAACCGGCACCGGA 4223
Query 40379 GCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGAC 40438
||| ||||| || || || | || | | |||| ||||| ||||||||| | ||
Sbjct 4222 GCCGCGCCCCGGCCCCACAGGAATGCCCTGCGCCTTGGCCCACTTGATGAAGTCGGACAC 4163
Query 40439 GACGAGGAAGTACGACGGGA-ACCCCATCTGGATGATCATGTCGA 40482
|| |||||||| | ||| | | |||| || |||| | |||||
Sbjct 4162 GATCAGGAAGTA-GCCGGAATATTTCATCCGGGTGATGACGTCGA 4119
Score = 95.1 bits (104), Expect = 4e-15
Identities = 79/97 (81%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 39307 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGA 39366
|||||||||||||||| ||||| ||||||||||| | || || | || ||||||||||
Sbjct 5249 TCTTCTTGCCCATCGCGCGGCGCAGCAGGTCGGCGTCGCCGAGCGAATAGCCGGCCATGA 5190
Query 39367 CCTGTGCAACCTTCTGCACCTGCTCCTGGTAGATGAT 39403
|||| || | || | |||||| ||||| ||||||||
Sbjct 5189 CCTGCGCGATCTGCATCACCTGTTCCTGATAGATGAT 5153
>seq811
Length=194255
Score = 156 bits (172), Expect = 1e-33
Identities = 235/332 (71%), Gaps = 4/332 (1%)
Strand=Plus/Plus
Query 40166 TCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGAT 40225
|||| |||| |||||| || |||| || ||||||||| | || || ||||
Sbjct 30626 TCCGAACGTGATGATCTGGGCTACCTGATCTCGCCCGTACTTTCCCTGCACATAGCGGAT 30685
Query 40226 GACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGC 40283
||||| |||| || || | || ||||||||| |||| |||||||| || |||||
Sbjct 30686 CACCTCTTCACGGCGGTCCTGACA--GAAGTCGATATCGAAGTCGGGCATCGAAACGCGA 30743
Query 40284 TCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATC 40343
|| ||||| |||||||| ||||| | ||| | | || || |||| ||| || |||
Sbjct 30744 TCCGGGTTGAGGAAGCGTTCGAAAAGCAGCGAGAACCGCAAAGGATCGACGTCAGTAATC 30803
Query 40344 CCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACC 40403
|| | |||||||| ||||||||||| | ||||| || || || |||||| |
Sbjct 30804 GTCAGCGCATAGGCGACGAGCGAACCGGCACCCGAGCCACGGCCCGGCCCGACCGGAATG 30863
Query 40404 CCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCC 40463
|| | | |||||||| ||| |||||||| |||| |||||||| ||||||| |
Sbjct 30864 CCATGGGCTTTCGCCCATTTGATAAAGTCCGCAACGATCAGGAAGTAGCCCGGGAACTTC 30923
Query 40464 ATCTGGATGATCATGTCGATCTCGTACTGGAG 40495
|| || |||| ||| |||||||||| | |||
Sbjct 30924 ATGCGGGTGATGATGCCGATCTCGTATTCGAG 30955
>seq998
Length=1052685
Score = 154 bits (170), Expect = 5e-33
Identities = 178/238 (75%), Gaps = 4/238 (2%)
Strand=Plus/Minus
Query 40215 ACGTACTGGATGACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCA 40272
||||| ||||| |||||||| || || || | || |||||||||||||| || ||||
Sbjct 531713 ACGTAATGGATCACCTCGCCGCGGCGATCCTGACA--GAAGTCGATGTCGAAGTCCGGCA 531656
Query 40273 TGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGA 40332
| |||||||||||||| || || ||||| ||||| | || ||| |||||| ||||
Sbjct 531655 TCGACACGCGCTCGGGATTGAGAAAGCGTTCGAACAGCAGGCCGAAGCGCAGCGGATCGA 531596
Query 40333 GGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGC 40392
|||||||||| || | ||||| |||||||| || || | ||||| ||||| || |
Sbjct 531595 GGTCGGTGATGGTCAGCGCATAGGCCACCAGCGAGCCCGCGCCGGAGCCGCGCCCCGGCC 531536
Query 40393 CGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTA 40450
||||| | || | | |||||||||| ||||||||| | |||| ||||||||
Sbjct 531535 CGACCGGAATGCCCTGCGCCTTCGCCCACTTGATGAAGTCGGACACGATCAGGAAGTA 531478
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 163321892716482
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |