Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq827 176 1e-39 seq316 158 4e-34 seq811 156 1e-33 seq998 154 5e-33 >seq827 Length=173386 Score = 176 bits (194), Expect = 1e-39 Identities = 226/306 (74%), Gaps = 13/306 (4%) Strand=Plus/Minus Query 40178 GATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGG--TG-ACGTACTGGATGACCTCGCC 40234 ||||||||||||| ||| ||||| | ||| || || || | ||| ||||| | Sbjct 45999 GATCTGCGCGACCCGGTCCTTGCCGTAGT---GGGCCTGCACATAGTCGATCACCTCTTC 45943 Query 40235 ACGACGC--CGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTC 40292 || ||| | | || |||||||||||||| ||||||||||| || || || |||||| Sbjct 45942 CCGCCGCTCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATGGAGACCCGTTCCGGGTTC 45885 Query 40293 AGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACG 40352 |||||||||||||| | || ||| | ||| ||||| || |||||||| ||| Sbjct 45884 AGGAAGCGCTCGAACAGCAGGCCGAACCGCAGGGGGTCAAGATCGGTGATGGTCAGGGAC 45825 Query 40353 TAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCC 40412 ||||||||||||||||||| ||||||||||||| || || ||| || || | ||| Sbjct 45824 CAGGCGACCAGCGAACCGGCGCCAGAGCCCCGCCCCGGCCCCACCGGGATGCCATGTTCC 45765 Query 40413 TTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCAT---CTGG 40469 || ||||| ||||||||||| |||| |||||||| ||||| ||||| |||| Sbjct 45764 TTGGCCCATTTGATGAAGTCCGACACGATCAGGAAGTAGCCGGGGAAACCCATCTGCTGG 45705 Query 40470 ATGATC 40475 |||||| Sbjct 45704 ATGATC 45699 Score = 107 bits (118), Expect = 6e-19 Identities = 208/301 (69%), Gaps = 12/301 (4%) Strand=Plus/Minus Query 39109 ACTCGGCCGGGTAGTGCGTCTTCAACCACGCCGTGCGGTACGCGATGAGTCCGTACGCCG 39168 ||||| |||| | | | ||||||||| |||| | ||| ||| || | || || | Sbjct 47023 ACTCGACCGGATGATTGGCCTTCAACCAGCCCGTCTGAAACGAGATCAGCGCATAGGCGG 46964 Query 39169 CCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAAGGGGACCAGCACGTCCCACACTGC-C 39227 | | ||||| |||||||||| ||||||| || || | ||| || || | | | | Sbjct 46963 CGGCGTGCGACTTGTTGAAGCCGTAGCCTGCAAACTTGGCCACCAGATCGAAGATGGAGC 46904 Query 39228 TGGATGGCACCGTCCGAGT-AGCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTC 39286 ||| | || || | | | ||| ||| |||| ||||| |||| |||| | Sbjct 46903 CGGACTGGGCC-TCGGGGACATCCTT-CTCCAGCGCGCCCTTGACGAAG----CGAAGGC 46850 Query 39287 CTTGG----CCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCT 39342 ||| ||| |||| |||||||||||||||||| ||||| || |||||||| | Sbjct 46849 GCTGGAAGTCCATCTCCTCCTTCTTCTTCTTGCCCATCGCGCGGCGCAGAAGGTCGGCTT 46790 Query 39343 GACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTCCTGGTAGATGA 39402 ||||||| |||| || |||| || || || | |||| |||||||||||||||||||| Sbjct 46789 CACCCAGGCTGTAGCCCGCCAGGATTTGGGCGATCTTCATCACCTGCTCCTGGTAGATGA 46730 Query 39403 T 39403 | Sbjct 46729 T 46729 >seq316 Length=8699 Score = 158 bits (174), Expect = 4e-34 Identities = 283/405 (70%), Gaps = 14/405 (3%) Strand=Plus/Minus Query 40085 CTTGGTCAGCTTCTCGCCGACCTGGA---AGGGCTTGTCGAGCACGCGAGCCG-CGTCCT 40140 |||||||||||| ||| ||||| | ||| | | | ||| || |||| |||| Sbjct 4516 CTTGGTCAGCTTGTCG---ACCTGCCCATACGGCATCTGCAACACCCG-GCCGACGTCGC 4461 Query 40141 TCATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCC 40200 || | || |||||||| | | |||| | || |||||| ||||| | |||| | Sbjct 4460 GCAGCACGCCGCGCGCCTGCAACGTTCCGAAGGTGATGATCTGGGCGACGTGATCGGTGC 4401 Query 40201 CGTACTTCCGGGTGACGTACTGGATGACCTCGCCACGACG--CCGGTCATCGAAGTCGAT 40258 |||| || ||||| | ||| ||||||||||| || || | || ||||||||| Sbjct 4400 CGTAGCGGCGCTGCACGTAGTCGATTACCTCGCCACGCCGGTCCTGACA--GAAGTCGAT 4343 Query 40259 GTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTG 40318 ||||| |||||||| |||||||| ||||| || |||||||||||||| | || ||| Sbjct 4342 GTCGAAGTCGGGCATCGACACGCGTTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGAA 4283 Query 40319 CTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGA 40378 | ||| |||||||||||||| ||| || || |||||||||||||| | || Sbjct 4282 ACGGATCGGATCGAGGTCGGTGATGGTGAGCGAATATGCCACCAGCGAACCGGCACCGGA 4223 Query 40379 GCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGAC 40438 ||| ||||| || || || | || | | |||| ||||| ||||||||| | || Sbjct 4222 GCCGCGCCCCGGCCCCACAGGAATGCCCTGCGCCTTGGCCCACTTGATGAAGTCGGACAC 4163 Query 40439 GACGAGGAAGTACGACGGGA-ACCCCATCTGGATGATCATGTCGA 40482 || |||||||| | ||| | | |||| || |||| | ||||| Sbjct 4162 GATCAGGAAGTA-GCCGGAATATTTCATCCGGGTGATGACGTCGA 4119 Score = 95.1 bits (104), Expect = 4e-15 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 39307 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGA 39366 |||||||||||||||| ||||| ||||||||||| | || || | || |||||||||| Sbjct 5249 TCTTCTTGCCCATCGCGCGGCGCAGCAGGTCGGCGTCGCCGAGCGAATAGCCGGCCATGA 5190 Query 39367 CCTGTGCAACCTTCTGCACCTGCTCCTGGTAGATGAT 39403 |||| || | || | |||||| ||||| |||||||| Sbjct 5189 CCTGCGCGATCTGCATCACCTGTTCCTGATAGATGAT 5153 >seq811 Length=194255 Score = 156 bits (172), Expect = 1e-33 Identities = 235/332 (71%), Gaps = 4/332 (1%) Strand=Plus/Plus Query 40166 TCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGAT 40225 |||| |||| |||||| || |||| || ||||||||| | || || |||| Sbjct 30626 TCCGAACGTGATGATCTGGGCTACCTGATCTCGCCCGTACTTTCCCTGCACATAGCGGAT 30685 Query 40226 GACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGC 40283 ||||| |||| || || | || ||||||||| |||| |||||||| || ||||| Sbjct 30686 CACCTCTTCACGGCGGTCCTGACA--GAAGTCGATATCGAAGTCGGGCATCGAAACGCGA 30743 Query 40284 TCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATC 40343 || ||||| |||||||| ||||| | ||| | | || || |||| ||| || ||| Sbjct 30744 TCCGGGTTGAGGAAGCGTTCGAAAAGCAGCGAGAACCGCAAAGGATCGACGTCAGTAATC 30803 Query 40344 CCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACC 40403 || | |||||||| ||||||||||| | ||||| || || || |||||| | Sbjct 30804 GTCAGCGCATAGGCGACGAGCGAACCGGCACCCGAGCCACGGCCCGGCCCGACCGGAATG 30863 Query 40404 CCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCC 40463 || | | |||||||| ||| |||||||| |||| |||||||| ||||||| | Sbjct 30864 CCATGGGCTTTCGCCCATTTGATAAAGTCCGCAACGATCAGGAAGTAGCCCGGGAACTTC 30923 Query 40464 ATCTGGATGATCATGTCGATCTCGTACTGGAG 40495 || || |||| ||| |||||||||| | ||| Sbjct 30924 ATGCGGGTGATGATGCCGATCTCGTATTCGAG 30955 >seq998 Length=1052685 Score = 154 bits (170), Expect = 5e-33 Identities = 178/238 (75%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 40215 ACGTACTGGATGACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCA 40272 ||||| ||||| |||||||| || || || | || |||||||||||||| || |||| Sbjct 531713 ACGTAATGGATCACCTCGCCGCGGCGATCCTGACA--GAAGTCGATGTCGAAGTCCGGCA 531656 Query 40273 TGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGA 40332 | |||||||||||||| || || ||||| ||||| | || ||| |||||| |||| Sbjct 531655 TCGACACGCGCTCGGGATTGAGAAAGCGTTCGAACAGCAGGCCGAAGCGCAGCGGATCGA 531596 Query 40333 GGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGC 40392 |||||||||| || | ||||| |||||||| || || | ||||| ||||| || | Sbjct 531595 GGTCGGTGATGGTCAGCGCATAGGCCACCAGCGAGCCCGCGCCGGAGCCGCGCCCCGGCC 531536 Query 40393 CGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTA 40450 ||||| | || | | |||||||||| ||||||||| | |||| |||||||| Sbjct 531535 CGACCGGAATGCCCTGCGCCTTCGCCCACTTGATGAAGTCGGACACGATCAGGAAGTA 531478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163321892716482