Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq1300 89.7 6e-13 seq966 89.7 6e-13 seq1155 84.2 2e-11 seq733 82.4 8e-11 >seq1300 Length=673 Score = 89.7 bits (98), Expect = 6e-13 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 9772 TGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 9831 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 153 TGGGGCCATAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCGTCGGTTCGAC 94 Query 9832 TCCG 9835 |||| Sbjct 93 TCCG 90 >seq966 Length=90452 Score = 89.7 bits (98), Expect = 6e-13 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 9772 TGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 9831 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 90301 TGGGGCCATAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCGTCGGTTCGAC 90360 Query 9832 TCCG 9835 |||| Sbjct 90361 TCCG 90364 >seq1155 Length=1012 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 148131 CGGGGTGTAGCTTAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAA 148190 |||| ||| ||| ||||||||||||||| || ||||||| || |||||||||||||| || Sbjct 439 CGGGATGTGGCTCAGCTTGGTAGAGCGCTCGGTTTGGGACCGAGAGGTCGCAGGTTCGAA 498 Query 148191 TCCTGCCACCCCGA 148204 ||||| | ||||| Sbjct 499 TCCTGTCTTCCCGA 512 >seq733 Length=265776 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 9773 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 9832 |||| ||||||||||||||||||||| ||| | ||| ||| || ||||||||||||| | Sbjct 182022 GGGGCTTTAGCTCAGTTGGTAGAGCGCTTGCATGGCATGCAAGAGGTCAGCGGTTCGACT 181963 Query 9833 CCGCTATTCTCCA 9845 |||||| ||||| Sbjct 181962 CCGCTAAGCTCCA 181950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549612101450280