Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_021560.1 Length=53102 Score E Sequences producing significant alignments: (Bits) Value seq1095 226 1e-54 seq1494 221 4e-53 seq812 100 1e-16 >seq1095 Length=1089284 Score = 226 bits (250), Expect = 1e-54 Identities = 269/362 (74%), Gaps = 2/362 (1%) Strand=Plus/Plus Query 31444 GCCACCGCCCTGACTGTCGAGCATGGTCAGCGTCGCATTGAAGCCGTTCAACACCACTTC 31503 ||| ||||| | | |||||||||||||| ||||| ||||| || | || ||| ||||| Sbjct 705718 GCCGCCGCCGCGGCCGTCGAGCATGGTCAAGGTCGCGTTGAAACCTTGCAGCACGACTTC 705777 Query 31504 GGTTGTGTAGCGATCACCACCG-TCGGAGTGCTGCCACTTGCGGGTTTGCAGCTTGCCCT 31562 ||| | || || || | ||| || | | | |||||||||||| |||| || || | Sbjct 705778 GGTGGAATAACGCTCCGCGCCGCTCTGGTCGGT-CCACTTGCGGGTCTGCAACTGACCTT 705836 Query 31563 CGATGTAAACCTTCGATCCCTTTTTCAGGTATTGCTCGCAAACCTTGACGAGACCTTCGG 31622 ||||||||||||| | ||||||||||| ||||| ||| ||| | ||||||||| Sbjct 705837 CGATGTAAACCTTGGCGCCCTTTTTCAGATATTGTTCGGCAACGCGGCACAGACCTTCGC 705896 Query 31623 TGAAGACGACGACGCTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTCGCGGTCGC 31682 |||||| || |||| |||||||||||| |||||||| |||||| ||| ||||| Sbjct 705897 TGAAGATCACCACGCGATGCCACTCGGTCTTTTCCTTGCGCTCGCCGGTGTTCTTGTCGC 705956 Query 31683 GCCAGCTTTCGGAAGTCGCAAGGCGAAGGCTGGCGATGCTACCCCCGGCTTGTGTCTTTC 31742 ||||| |||| || ||||| | || || ||||||| | ||| | || ||| Sbjct 705957 GCCAGGTTTCCGACGTCGCGATCCGCAGATTGGCGATCGGCCTGCCGTCCTGGGTCCGCT 706016 Query 31743 GGATTTCCGGATCGGCGCCGAGATGGCCGATAAGAATGACTTTGTTGACGCTACCGGCCA 31802 ||||||||||||||| || |||| ||||| |||||||| ||||| ||||| || |||| Sbjct 706017 TGATTTCCGGATCGGCCCCAAGATTGCCGACCAGAATGACCTTGTTCACGCTCCCCGCCA 706076 Query 31803 TC 31804 || Sbjct 706077 TC 706078 Score = 125 bits (138), Expect = 2e-24 Identities = 239/349 (68%), Gaps = 10/349 (3%) Strand=Plus/Minus Query 31460 TCGAGCATGGTCAG--CGTCGCATTGAAGCCGTTCAACACCACTTCGGTTGTGTAGCGAT 31517 || ||||| ||||| || ||| | ||| ||| | || |||||||| ||||||| | Sbjct 160510 TCCAGCATCGTCAGAACGCCGCCGT--AGCTGTTGAGGACGACTTCGGTACTGTAGCGCT 160453 Query 31518 CACCACCGTCGGAGTGCTG---CCACTTGCGGGTTTGCAGCTTGCCCTCGATGTAAACCT 31574 | ||| || || | ||| || ||||| || | || ||| || ||||| |||| Sbjct 160452 CGGTGCCG---GATTGATCGGTCCATTTCCGGGTCTGTAACTGGCCTTCAATGTAGACCT 160396 Query 31575 TCGATCCCTTTTTCAGGTATTGCTCGCAAACCTTGACGAGACCTTCGGTGAAGACGACGA 31634 | ||||| ||||||||| ||||| | || || || |||| || || Sbjct 160395 TTTGCCCCTTGCGGCAGTATTGCTCCGCGACCTTCGCAAGGCCCTCATTGAACACAGAGA 160336 Query 31635 CGCTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTCGCGGTCGCGCCAGCTTTCGG 31694 ||| ||||| || || |||||||| ||||| || |||||||||| ||| | Sbjct 160335 CGCGGTGCCATTCCGTCTTTTCCTTGCGCTCGCCAGAGTTTTTGTCGCGCCAGGATTCCG 160276 Query 31695 AAGTCGCAAGGCGAAGGCTGGCGATGCTACCCCCGGCTTGTGTCTTTCGGATTTCCGGAT 31754 | || || | |||||| ||||||| | || |||| || | |||||||| |||| Sbjct 160275 ACGTTGCTACGCGAAGATTGGCGATAGCCCGGCCATCTTGGGTGTGACGGATTTCAGGAT 160216 Query 31755 CGGCGCCGAGATGGCCGATAAGAATGACTTTGTTGACGCTACCGGCCAT 31803 |||||||||||| || || |||||||||||||| ||||| || | ||| Sbjct 160215 CGGCGCCGAGATTTCCTATCAGAATGACTTTGTTCACGCTGCCCGACAT 160167 >seq1494 Length=1074632 Score = 221 bits (244), Expect = 4e-53 Identities = 265/360 (74%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 31444 GCCACCGCCCTGACTGTCGAGCATGGTCAGCGTCGCATTGAAGCCGTTCAACACCACTTC 31503 ||| ||||| | | ||||||||||||||||||| |||||||| | || || || || Sbjct 852 GCCGCCGCCACGGCCATCGAGCATGGTCAGCGTCGAGTTGAAGCCCTGCAGAACGACCTC 793 Query 31504 GGTTGTGTAGCGATCACCACCGTCGGAGTGCTGCCACTTGCGGGTTTGCAGCTTGCCCTC 31563 ||| | ||| || ||||| || ||||||||| ||||| || ||| |||||| Sbjct 792 GGTCGAGTACTTGTCCTTGCCGTCCTTGTCCTGCCACTTCCGGGTCTGGAGCGCGCCCTC 733 Query 31564 GATGTAAACCTTCGATCCCTTTTTCAGGTATTGCTCGCAAACCTTGACGAGACCTTCGGT 31623 |||||||||||| | ||||| ||||| || ||||| |||||| || || || | Sbjct 732 GATGTAAACCTTGGCGCCCTTCTTCAGATACTGCTCCGCGACCTTGCAAAGCCCCTCATT 673 Query 31624 GAAGACGACGACGCTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTCGCGGTCGCG 31683 ||| | |||||||| |||||||||||| |||||||| |||||| ||| ||| || Sbjct 672 GAAAATGACGACGCGATGCCACTCGGTCTTTTCCTTGCGTTCGCCGGTGTTCTTGTCACG 613 Query 31684 CCAGCTTTCGGAAGTCGCAAGGCGAAGGCTGGCGATGCTACCCCCGGCTTGTGTCTTTCG 31743 |||| | ||||| ||||| | || || ||||||| | |||| | || || || Sbjct 612 CCAGGTCTCGGACGTCGCGATGCTGAGATTGGCGATCGGCCGCCCGTCCTGGGTGCGCCG 553 Query 31744 GATTTCCGGATCGGCGCCGAGATGGCCGATAAGAATGACTTTGTTGACGCTACCGGCCAT 31803 ||| || |||||||| ||||||| ||| | |||||||| ||||||||||| || ||||| Sbjct 552 GATATCGGGATCGGCCCCGAGATTGCCCACCAGAATGACCTTGTTGACGCTGCCTGCCAT 493 >seq812 Length=1388629 Score = 100 bits (110), Expect = 1e-16 Identities = 151/211 (72%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 28523 GCGCTGCCGGCATCAGGATTGGTCACGAGAAGCTTCAGGGTGCCTTCGGAGAAGTGGAAC 28582 |||||||||| ||| |||||||| ||| ||| ||| |||| |||||| | | Sbjct 338689 GCGCTGCCGGAATCCGGATTGGTGACGGAGAGCACCAGCTTGCCCGCGGAGAGCGCCAGC 338630 Query 28583 TTCATCGCCCGGCCGCGCTCGGTTGAAACCGACGACACACGGTCAACGGCCGAGGCG-AT 28641 || | ||| |||||||||||| | |||| | ||| || ||||| || |||| || | Sbjct 338629 TTGACCGCGCGGCCGCGCTCGCTGGAAATGGTCGAGACGCGGTCCACCGCCGCCTCGAAA 338570 Query 28642 TGCT--TTGGCGTC-CGCCGTCACGTCGGTGGCATTGTTGGCTGGGATGACCCGGACGTA 28698 | || ||| || | ||| || || || | ||||| || ||||| ||| |||| Sbjct 338569 TCCTTCTTGTCGACGCGCAGT----TCCTTGTCGTTGTTCTGCGGAATGACGCGGCCGTA 338514 Query 28699 GTCCGGGAACGTGCCGTCGATCAGTTTCGAT 28729 |||||||| |||||||||||||| |||||| Sbjct 338513 ATCCGGGAAGGTGCCGTCGATCAGCTTCGAT 338483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169801777368432