Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq752 271 2e-68 seq1095 105 2e-18 seq900 98.7 3e-16 seq1494 84.2 6e-12 seq1388 80.6 7e-11 seq812 80.6 7e-11 >seq752 Length=262051 Score = 271 bits (300), Expect = 2e-68 Identities = 293/388 (76%), Gaps = 0/388 (0%) Strand=Plus/Plus Query 37125 CCGCAACGCCGCCGCCAAAGAAAATCACTTCGGCGCAAACGTGCTGGTTACCCGCAAAGG 37184 || |||| || | | || ||||| || |||||| | || | | ||||| ||||| Sbjct 252279 CCACAACTACGTCTCGAAGGAAAAGCATTTCGGCAAGGATGTCTTCCTGACCCGAAAAGG 252338 Query 37185 TGCTGTTCGGGCCCGCGAGGGCGACCTGGGCATCATCCCTGGCTCGATGGGTGCGAAGTC 37244 || | |||| || ||||| |||||||||||||| || |||||||| |||||||| Sbjct 252339 CGCGATGTCGGCCAAGGACGGCGAACTGGGCATCATCCCCGGATCGATGGGGGCGAAGTC 252398 Query 37245 ATTCATCGTTCGCGGCAAGGGAAATTCCGAATCGTTCTGCTCTTGCAGCCACGGTGCCGG 37304 |||||||| ||||||||||| ||| | ||| |||||| | ||| ||||| ||||| Sbjct 252399 CTTCATCGTGCGCGGCAAGGGCAATGCGGAAAGCTTCTGCACCTGCTCGCACGGCGCCGG 252458 Query 37305 TCGAATGATGAGCCGGGCCGAAGCAAAACGCCGGTTCACAGTCGAGGATCATGAGGCGGC 37364 ||| | ||||||||| |||| || || ||||| ||||| |||||||| || | || Sbjct 252459 TCGGACCATGAGCCGGACCGAGGCCAAGCGCCGCTTCACGGTCGAGGACCACGTCCGCGC 252518 Query 37365 CACCAAAGGTATCGAGTGCCGCAAAGATGCCGAAGTGATCGACGAGACGCCAGCGGCTTA 37424 |||| || ||||||||||||| || ||||||||||||||||| || || ||| || Sbjct 252519 CACCGCTGGCGTCGAGTGCCGCAAGGACGCCGAAGTGATCGACGAAACCCCGATGGCCTA 252578 Query 37425 CAAGGACATCGATGCGGTCATGGCCGCGCAATCCGCCCTGGTGGACATCGTGCACACGCT 37484 ||||||||||| |||||||| || || || ||| |||| | || |||||||||| || Sbjct 252579 TAAGGACATCGACGCGGTCATCGCGGCCCAGACCGACCTGATCGAGGTCGTGCACACCCT 252638 Query 37485 GCGCCAAGTCGTTTGCGTGAAGGGTTGA 37512 ||| ||||| || ||||| ||||| ||| Sbjct 252639 GCGTCAAGTGGTGTGCGTCAAGGGATGA 252666 >seq1095 Length=1089284 Score = 105 bits (116), Expect = 2e-18 Identities = 99/123 (80%), Gaps = 5/123 (4%) Strand=Plus/Plus Query 23539 CCCTTGCGCAGATACTCGCCGGCAATCTCGGC---GACCTT-GCCGAAGAACACGACGCG 23594 ||||| |||||| | |||||| | |||| |||||| || ||||| ||| ||||| Sbjct 705854 CCCTTTTTCAGATATTGTTCGGCAA-CGCGGCACAGACCTTCGCTGAAGATCACCACGCG 705912 Query 23595 GTGCCATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGT 23654 ||||| |||||||||||||||||||||||||| | |||||| ||||||||||||||| Sbjct 705913 ATGCCACTCGGTCTTTTCCTTGCGCTCGCCGGTGTTCTTGTCGCGCCAGGTTTCCGACGT 705972 Query 23655 GGC 23657 || Sbjct 705973 CGC 705975 >seq900 Length=120344 Score = 98.7 bits (108), Expect = 3e-16 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 23580 GAAGAACACGACGCGGTGCCATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTT 23639 ||||| |||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 12211 GAAGATGACGACGCGGTGCCATTCGGTCTTTTCCTTGCGCTCGCCCGAGGACTTGTCGCG 12270 Query 23640 CCAGGTTTCCGACGTGGCCAGGCTGATGTTGCAGACGGCATCGCCGTTTTGCAGGTAGCG 23699 |||||||||||| || || | | |||| || | |||||||| ||| | |||| Sbjct 12271 CCAGGTTTCCGAGGTCGCAATCGACAGGTTGGCGATGCGGTCGCCGTTCGGCATGGAGCG 12330 Query 23700 CACTTCCGGGTC 23711 | ||||||||| Sbjct 12331 AATTTCCGGGTC 12342 >seq1494 Length=1074632 Score = 84.2 bits (92), Expect = 6e-12 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 23587 ACGACGCGGTGCCATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTT 23646 |||||||| ||||| ||||||||||||||||| |||||||| | |||||| |||||| Sbjct 665 ACGACGCGATGCCACTCGGTCTTTTCCTTGCGTTCGCCGGTGTTCTTGTCACGCCAGGTC 606 Query 23647 TCCGACGTGGCCAGGCTGA 23665 || ||||| || | ||||| Sbjct 605 TCGGACGTCGCGATGCTGA 587 >seq1388 Length=494395 Score = 80.6 bits (88), Expect = 7e-11 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 21060 TGATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTA 21119 || ||||| ||||||| ||||||||| ||||||| || ||| | ||| || |||||| Sbjct 18717 TGCTGGCGCACCCGACACGATTCGAACGTGTGACCTTTGCCTTCGGAGGGCAACGCTCTA 18776 Query 21120 TCCAGCTGAGCTACGGG 21136 ||||||||||||||||| Sbjct 18777 TCCAGCTGAGCTACGGG 18793 >seq812 Length=1388629 Score = 80.6 bits (88), Expect = 7e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122 ||||| ||||||| ||||||||| ||||||| || ||| | ||| || ||||||||| Sbjct 950961 TGGCGCACCCGACACGATTCGAACGTGTGACCTTTGCCTTCGGAGGGCAACGCTCTATCC 951020 Query 21123 AGCTGAGCTACGGG 21136 |||||||||||||| Sbjct 951021 AGCTGAGCTACGGG 951034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139280720671988