Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_023704.1 Length=51421 Score E Sequences producing significant alignments: (Bits) Value seq743 91.5 5e-14 >seq743 Length=263205 Score = 91.5 bits (100), Expect = 5e-14 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 40382 CGCCGCCTTGTCGATGGCCTTGGACACGTCGAGCGACTTCGGAAACCCGCTGCCGTACAG 40441 |||||| || || || ||||| ||| || |||||||||||||||| | || || | Sbjct 30753 CGCCGCTTTATCAATCCCCTTGCTCACATCATGCGACTTCGGAAACCCCGTCCCATAAAT 30812 Query 40442 CCACGCGATGGAGTCGCGGATCTCGAAACCGGCGTCCTCAATGGCAACGGTCAGGCGGTG 40501 |||| || ||||||||||| || || || || || || || || | || |||||| Sbjct 30813 CCACATGAGCGAGTCGCGGATTTCAAACCCCGCATCTTCGATCGCGCACGCCATGCGGTG 30872 Query 40502 CCAGGTGCGCGAACCTCCGAAGGCGAACAGGTGCCCGCCCGGTTTGAGGACTCGCAGG 40559 || |||||| | ||||| || | ||||||||| ||||| || || |||||| Sbjct 30873 ATAGCCGCGCGATGCGCCGAACGCAGCGACGTGCCCGCCAGGTTTCAGCACGCGCAGG 30930 Score = 80.6 bits (88), Expect = 9e-11 Identities = 106/143 (74%), Gaps = 8/143 (6%) Strand=Plus/Plus Query 40236 TCGATGTTGAGTGCCCCGGTGCCGT-GCGCCAGCACGTTCGCCGCCACGGTGCCCGC--- 40291 || || || || || || ||||| |||| |||||||| || || || ||||| | Sbjct 30481 TCAATATTCAGCGCGCCCGTGCCCCAGCGC-AGCACGTTGGCGGCAACCGTGCCTTCTGA 30539 Query 40292 CAGCGGTTTTCGCGCGACCACGATGGGCTCAAAGGCGGGTTTCAGCGCGGTGCCCCAGCC 40351 |||||| || ||||||| || ||||| || ||||||||||| |||||||| ||||| || Sbjct 30540 CAGCGGCTTGCGCGCGAGGACAATGGGTTCGAAGGCGGGTTTGAGCGCGGTTCCCCATCC 30599 Query 40352 CTGCCACTGCTTGACGGCATCGG 40374 | ||| || | |||| |||| Sbjct 30600 TTCCCATTG---GGCGGCTTCGG 30619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164422673121554