Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq720 318 2e-81 seq522 156 1e-32 seq513 145 2e-29 seq1318 89.7 2e-12 >seq720 Length=4951 Score = 318 bits (352), Expect = 2e-81 Identities = 549/790 (69%), Gaps = 37/790 (5%) Strand=Plus/Minus Query 69268 TATTTCTATGTAATGCATAGATTTGAACCCGAGACTAGACTTGATTTTATTAAAGATATG 69327 || || ||||||||||| | ||| | ||| | | || | ||||||||| |||| Sbjct 1077 TACTTTTATGTAATGCACCGTTTTAATATCGA---TCAAATTAAATTTATTAAAAGTATG 1021 Query 69328 CAAACTCGCAACTTATATGCTTCTATTAGTGTTGGTGTAAAAGAAGAAGAGTATCAATTT 69387 || | || ||||||||||| ||||| ||||||| ||| |||| || | | || Sbjct 1020 CATGAACAAAAGTTATATGCTTCAATTAGCATTGGTGTTAAAAAAGAGGATAAAGAGTTA 961 Query 69388 ATTAATCAATTAGCTGATGAAA----AACTTGTTCCAGAATATATCACTATTGATATAGC 69443 || | |||||| || ||| | || ||||||||| ||| ||||||||||| || Sbjct 960 CTTGAACAATTA----ATCAAACTGAATCTAATTCCAGAATTTATTACTATTGATATTGC 905 Query 69444 TCACGGACATTCTAATGCTGTTATTAAAATGATTCAACATATAAAGAAGATGTT------ 69497 || || ||| ||||||| | |||||||| || |||||| | | || Sbjct 904 ACATGGTCATAGTAATGCTATGGAAGAAATGATTAAATTTATAAAAACTACTTTTGCTAA 845 Query 69498 ACCAAATAGT------TTTGTTATTGCTGGTAATGTTGGTACACCTGAAGCTGTTCGTGA 69551 | |||||| | ||| ||||||||||||| ||| ||| |||||| || Sbjct 844 AACAAATACTAAACCTTTTATTATTGCTGGTAACGTTATGACAAAAACCGCTGTTAAAGA 785 Query 69552 ACTTGAAAATGCAGGCGCAGATGCTACAAAAGTTGGTATTGGCCCAGGTAAAGTATGTAT 69611 | ||||| |||||| ||||| | ||| ||||| |||||||||| |||| ||||| Sbjct 784 TTTAGAAAAATGAGGCGCTGATGCAATTAAATTTGGTGTTGGCCCAGGAAAAGCTTGTAT 725 Query 69612 TACTAAAATCAAAACTGGTTTTGGTACTGGCGGCTGGCAGTTAGCTGCATTGCGTTGGTG 69671 ||||||| | |||||||| |||||||| || || || || ||| ||| || | | || Sbjct 724 TACTAAACTAAAAACTGGATTTGGTACAGGTGGTTGACAATTAAATGCTTTACAA-GATG 666 Query 69672 TT--CAAAAGTAGCTACTAAACCAATAATTGCTGATGGTGGTATTCGTACTAACGGTGAT 69729 || ||| || | | ||||||||| ||||||| |||||||||||| | ||| |||||| Sbjct 665 TTGCCAATAGCACC-ACTAAACCATTAATTGCAGATGGTGGTATTAGATGTAATGGTGAT 607 Query 69730 ATTGCTAAATCTGTACGTTTTGGCGCTTCAATGGTTATGATTGGTTCGCTATTTGCGGGT 69789 ||||||||| | || |||||| || | ||| ||||| || | || |||||| Sbjct 606 ATTGCTAAAGCAATAGCTTTTGGTGCCACTATGATTATGGCAGGAAGTATTTTAGCGGGT 547 Query 69790 CACGAGGAATCACCAGGTGAGACGATAGaaaaaaaTGGTAAATTATATAAAGAGTATTTT 69849 | || |||||||| || | | | || ||||||| ||| || ||||| |||||| Sbjct 546 TATGATGAATCACCTGGCAAAATTGTTACAATAAATGGTCAATCTTACAAAGAATATTTT 487 Query 69850 GGATCCGCTTCTGAATATCAAAAGGGTGAAAAGAAGAACGTTGAAGGAAAGAAGATACAT 69909 ||||| || | | | | || | ||| ||| || ||||||| || || |||| | Sbjct 486 GGATCAGCAAGTATTTTTAACAAAGCGGAAGCGAAAAATATTGAAGGTAAAAAAATACTT 427 Query 69910 GTAGAATGTAAAGGGAGTTTGAA----AGATACGTTGATTGAAATGGAACAAGATCTTCA 69965 || || |||||| || || ||||| | | ||||||||| ||||| | || Sbjct 426 GTTCCATATAAAGG----TTCAATTGCTGATACTTATAAAGAAATGGAAGAAGATTTACA 371 Query 69966 ATCTTCAATTTCTTATGCTGGTGGTAAAGATTTATTAGCAATTA-GAAATGTAGATTATG 70024 |||| | |||||||||||||||||||||||||||| ||| | | |||||| ||||||| Sbjct 370 ATCTGCTATTTCTTATGCTGGTGGTAAAGATTTATCTGCATTAACAAAATGT-GATTATG 312 Query 70025 TCGTTGTTAA 70034 | ||||||| Sbjct 311 TTATTGTTAA 302 >seq522 Length=6543 Score = 156 bits (172), Expect = 1e-32 Identities = 206/283 (73%), Gaps = 11/283 (4%) Strand=Plus/Plus Query 182240 GAGCTTTACCTGATGCAAGAGACGGATTAAAACCATCACAACGTCGAATTTTATATGCTT 182299 |||||||||| ||||||||||| ||||| |||||| ||| ||||||||||||||| ||| Sbjct 4194 GAGCTTTACCAGATGCAAGAGATGGATTGAAACCAGTACATCGTCGAATTTTATATTCTT 4253 Query 182300 TATGGGATTTAGGAATGCTACCTCATAAACCATATCGAAAATCAGCA-ACAGTGAATGGC 182358 || |||||| ||| | | ||||||| ||| |||| ||||| | || | Sbjct 4254 TAGCAATTTTAGGTATGACATATGATAAACCTTATAAAAAAGCAGCACGTATTGTTGGAG 4313 Query 182359 CACGTAATGGGTAATTTCCATCCACATGGTGATA------CTTATGGTGTAATGGTAAAT 182412 | ||| ||| ||||| ||||| |||||||||| ||||| |||||||| Sbjct 4314 AATGTATTGGAAAATTT-CATCCTCATGGTGATATTGCAGTTTATGAAACAATGGTAAGA 4372 Query 182413 ATGACAAATGAATTAAGTATTCGATATCCAGTAGTTGATGGTCAGGGTAACTTTGGTAAC 182472 ||| || | ||||| | | ||| ||||| ||| |||||| || ||||| |||||| Sbjct 4373 ATGGCACAAGAATTTAATTATCGTTATCCTTTAGCTGATGGCCAAGGTAATTTTGGT--- 4429 Query 182473 CCATTAGATGGTGATGGTGCAGCAGCGATGCGTTATACTGAAG 182515 || | ||||||||| |||| || || ||| | |||||||||| Sbjct 4430 TCAATTGATGGTGATAGTGCTGCTGCTATGAGATATACTGAAG 4472 Score = 138 bits (152), Expect = 4e-27 Identities = 279/410 (68%), Gaps = 23/410 (6%) Strand=Plus/Plus Query 180782 TTTACCAGGGAAATTAGCTGATTGTACTTCTAAA------ACTTATTCTGAACTATATAT 180835 |||||| || |||||||| |||||| |||||||| ||| | | ||| | | | | Sbjct 3351 TTTACCTGGTAAATTAGCAGATTGTTCTTCTAAAGATCCAACTAAAACAGAAGTTTTTCT 3410 Query 180836 TGTAGAAGGTGATTCTGCTGGTGGTTCTGCTAAGTCCGGAAGAAATCGTTACTACCAAGC 180895 ||| |||||||| || |||||||| |||| |||| ||||||| | | | ||||| Sbjct 3411 TGTCGAAGGTGAGTCAGCTGGTGGAACTGCAAAGTTGGGAAGAAGTAGAGAAATTCAAGC 3470 Query 180896 AATATTATCATTACGTGGCAAAATCTTAAACGTGGAGAAA--AGTAGTTTAGAAAGAATG 180953 ||| ||| ||||| | || ||||| | || || || ||| | | ||| |||| | Sbjct 3471 AATTTTACCATTAAGAGGGAAAATAATTAATGTTGAAAAAGCACGACTTTTAAAAGTTTT 3530 Query 180954 CT-TAACTCTGAAATGATTAAGAATATCATAGGTGCAGTTGGTACTGGCATTGATTCGCC 181012 | | || ||||| | ||| ||| || | | ||||| ||| ||| | Sbjct 3531 TTCTGACGAAGAAATAAATAATCTTATTAT---TTCCTTTGGTTGTGGTGTTGGT----- 3582 Query 181013 AGGACAAAAGTTCGAATATGAA-AAATTGCGATATGATAAAATTATTTTCATGTGTGATG 181071 | | || || ||||| | ||||| || ||| ||||||||||| | ||| ||||| Sbjct 3583 ---AAAGAATTT--AATATTACTAAATTACGTTATCATAAAATTATTATTATGACTGATG 3637 Query 181072 CTGATGTCGATGGTTCTCATATTGAAGCACTACTACTAACGTTATTCTATAATTATATGA 181131 ||||||| || ||||| |||||| || || || || |||| || || ||| ||| ||| Sbjct 3638 CTGATGTTGACGGTTCACATATTAAAACATTATTATTAACATTTTTTTATCGTTACATGC 3697 Query 181132 GACCATTAATTGAAAAAGGGCATGTATATGCGGCTCAGCCACCATTATAT 181181 | || |||||||| || || ||||| ||||| || || |||||| Sbjct 3698 GTCCCTTAATTGATGCTGGTTATATATATATAGCTCAACCTCCTTTATAT 3747 >seq513 Length=6546 Score = 145 bits (160), Expect = 2e-29 Identities = 416/628 (66%), Gaps = 30/628 (5%) Strand=Plus/Minus Query 53990 TATGGCGATTTCAAAGTTTTATAAAGATTATGCTTTAAAAACA---AACGATAAAAAATT 54046 ||||| |||| ||| |||||||| |||||||||||||| || | |||| ||| Sbjct 1753 TATGGGTATTTTAAAATTTTATAATTCTTATGCTTTAAAAAGTTTTAATGGTAAACAAT- 1695 Query 54047 CTACTTAGAATCTTATGAAGATCGTATTGCTATTGTTTCTTTATTCTTAGGACAAGGTAA 54106 | |||||| |||||||||| | ||| ||| | |||||| || | | ||||| Sbjct 1694 --ATTTAGAAAATTATGAAGATAGAGTTGTTATGAATAGTTTATTTTTCGCTGATGGTAA 1637 Query 54107 T-TTCAATAA---AGCAAAAAGTTTAGCTGTTTCTATGATTGAACAAAGATACCAACCAG 54162 | || || | || |||| || || | |||| || |||| ||||||| Sbjct 1636 TATTGAACATGCTAGTAAAATTTTAAGACAAAT-TATGTCTGGT---AGATTTCAACCAG 1581 Query 54163 CTACTCCAACTTTCCTAAATGCTGGTAGAAGCAGACGCGGAGAAATGGTTTCTTGTT-TC 54221 ||||||| || || ||||||| || | || | | || ||| ||| |||| || Sbjct 1580 CTACTCCCACATTTTTAAATGCAGGAAAAAAACAAAGAGGTGAATACACTTCATGTTATC 1521 Query 54222 TTATTAGAAATGGATGATAGCTTGAATTCAATTGGTTTCAATATCAATACTGCAATGCAA 54281 || ||| ||| || |||| | || | ||||||| | | ||| | |||| || | || Sbjct 1520 TT-TTACGAATTGAAGATAACATGGAATCAATTGCTCGCGCTATTACTACTTCATTACAG 1462 Query 54282 TTATCTAAAATTGGCGGCGGCGTTGCCTTAAACCTTTCTAAACTTAGAGGAAGAAAAGAG 54341 ||||| ||| |||||| || ||||| || | | || | |||| | || Sbjct 1461 TTATCAAAACGTGGCGGTGGAGTTGCTTTGTGTTTAACAAATTTAAGAGAATTTGGAGCT 1402 Query 54342 CAAATTAAAGGTATTGATGATGCTGCTTCTGGAGTAGTACCAGTTATGAAACTTTTAGAA 54401 | ||||||| |||| | || || | || || | |||||||||||| || | ||| Sbjct 1401 CCAATTAAAAATATTAAAAATCAAGCAACAGGCGTTATCCCAGTTATGAAAATTCTTGAA 1342 Query 54402 GATAGCTTCTCTTATGCTAATCAGCTTGGCCAAAGAAAAGGCGCTGGAGCTGTTTACTTA 54461 ||| || || ||||||||||| || || |||||| |||| ||||| || ||||| ||| Sbjct 1341 GATTCATTTTCATATGCTAATCAACTAGGTCAAAGACAAGGTGCTGGGGCAGTTTATTTA 1282 Query 54462 AA----CATCTTCCACTGGGATATTATTGAATTCTTAGATACTAAAAAGATCAATGCTGA 54517 || |||| |||| |||||||| ||| |||||| | || ||||| || Sbjct 1281 AATGTTCATCATCCA----GATATTATGTTATTTTTAGATTCAAAGCGTGAAAATGCAGA 1226 Query 54518 TGAAAAAGCCAGAATTCAATCTTTATCTATTGGATTA---ATTGCTGAAAAAATCTTCTT 54574 ||||||| | ||| |||| | ||| | ||| || ||| |||| | | || || Sbjct 1225 TGAAAAAATTCGTATTAAATCAATGTCTTTAGGAGTAGTTATTCCTGATATTA-CT--TT 1169 Query 54575 CCAATTAGCAAAAAGAAACGAAGAAATG 54602 |||||||||||| || ||| | ||| Sbjct 1168 TGAATTAGCAAAAAACAATGAACAGATG 1141 >seq1318 Length=12988 Score = 89.7 bits (98), Expect = 2e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 403938 TGTGCGCCTGTAGCTCAGCTGGATAGAGCACGAGCCTTCTAAGCCCGCGGTCGTAGGTTC 403997 |||| ||| ||||||||| ||||||||||| |||||||||||| |||||||||||| Sbjct 1830 TGTGTGCCCGTAGCTCAGTTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCGTAGGTTC 1771 Query 403998 GAATCCTACCAGGC 404011 |||||||||| ||| Sbjct 1770 GAATCCTACCGGGC 1757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591879825868352