Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_023723.1 Length=53684 Score E Sequences producing significant alignments: (Bits) Value seq743 91.5 5e-14 seq1494 87.8 6e-13 >seq743 Length=263205 Score = 91.5 bits (100), Expect = 5e-14 Identities = 181/264 (69%), Gaps = 8/264 (3%) Strand=Plus/Plus Query 41858 ACCTCCCGCTCGGCACCTGCGGCCCGGTCGATGGCCTTGGATACGTCGAGCGACTTCGGG 41917 ||||| || || ||||| || || || || ||||| || || |||||||||| Sbjct 30736 ACCTCACGTTCCGCACCCGCCGCTTTATCAATCCCCTTGCTCACATCATGCGACTTCGGA 30795 Query 41918 AACCCGGATCCGTACAGCCAGGCGATGGAGTCACGAATCTCGAAACCGGCGTCCTCGATG 41977 ||||| | || || | ||| || ||||| || || || || || || || ||||| Sbjct 30796 AACCCCGTCCCATAAATCCACATGAGCGAGTCGCGGATTTCAAACCCCGCATCTTCGATC 30855 Query 41978 GC-CACGGCCAGCCGGTGCCAGGTGCGCGAACCGCCGAACGCCAACATGTGCCCACCCGG 42036 || |||| ||| ||||| || |||||| |||||||||| | |||||| || || Sbjct 30856 GCGCACG-CCATGCGGTGATAGCCGCGCGATGCGCCGAACGCAGCGACGTGCCCGCCAGG 30914 Query 42037 CTTGAGGACCCGCAGGCATTGCTCCCACATCTCGACATCGAAGGCGAT---GCCCGAGTT 42093 || || || |||||| || ||| | || | |||||||| ||||| | Sbjct 30915 TTTCAGCACGCGCAGGACTTCGGACCAGAATTCTTCCGAGAAGGCGACCTCGCCCG---T 30971 Query 42094 GTCCCACTTCTTGCCCATGAATCC 42117 |||||| | ||||||||||||||| Sbjct 30972 GTCCCATTGCTTGCCCATGAATCC 30995 >seq1494 Length=1074632 Score = 87.8 bits (96), Expect = 6e-13 Identities = 107/145 (74%), Gaps = 6/145 (4%) Strand=Plus/Plus Query 41601 CACCGATTCGGCAGGCGTCGATGTTCAACGCCCCCGTACCGTGCTCCAGGACGTTCGCCG 41660 || ||| ||||||||| ||||| || | || ||||| ||||| | ||||| |||||| | Sbjct 599114 CATCGACTCGGCAGGCATCGATATTAATGGCGCCCGTTCCGTGTTGCAGGATGTTCGCGG 599173 Query 41661 CCACCGTGC-----CCA-CGAGAGGCTTGCGCGCGACCACGATGGGCTCAAACGCCGGTT 41714 | |||||| | | | |||||||||||||||| ||| ||||| | | |||| Sbjct 599174 CGACCGTGTTGTTTCTATCCAGAGGCTTGCGCGCGAGACAGATCGGCTCCACAGATGGTT 599233 Query 41715 TCAGCGCCGTACCCCAGCCCTGCCA 41739 ||| ||||| |||||||| |||| Sbjct 599234 TCAAGGCCGTGCCCCAGCCTCGCCA 599258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171664144216548