Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_023724.1 Length=62991 Score E Sequences producing significant alignments: (Bits) Value seq97 123 1e-23 seq752 95.1 5e-15 seq998 82.4 3e-11 seq316 82.4 3e-11 >seq97 Length=479585 Score = 123 bits (136), Expect = 1e-23 Identities = 143/190 (75%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 36538 CGACGTCGTGAACCACCCGGCGCACTACA-CGTCGCACCCCAGCGGCGTCGAGTGCATCA 36596 |||| |||||||| ||| || || |||| || | ||||| ||||| |||| |||||| Sbjct 255927 CGACAACGTGAACCGCCCAGCACATTACAACGGC-CACCCAAGCGGTATCGAATGCATCC 255869 Query 36597 CCGTCACCGAGCACATGGGCTTCAACCTCGGCAACGCCGTTAAGTACATCTGGCGCTGCG 36656 | ||||||| ||| ||||||| ||||| || ||| | || |||||||||||||||| Sbjct 255868 AGATAGCCGAGCATATGAGCTTCAATCTCGGAAATGCCCTAAAATACATCTGGCGCTGCG 255809 Query 36657 ACTTGAAGCGCGACGCGATCGAGGATCTGCGCAAGGCACGGTTCTACATCGACCGCGAAA 36716 | |||||| ||||| || || || ||| || || || | ||||||||||| |||| Sbjct 255808 ATCTGAAGCAAGACGCAATTGAAGACCTGGAGAAAGCCCGTTGGTACATCGACCGGGAAA 255749 Query 36717 TCGCGAAACG 36726 || ||| || Sbjct 255748 TCAAGAAGCG 255739 >seq752 Length=262051 Score = 95.1 bits (104), Expect = 5e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 51999 CTGCCGTTCGTGCATCCGCACGTTGCCCTCATGCCCGACGCGCACGTCGGCAAAGGTTCG 52058 ||||||||| | ||| || || || |||||||||||| |||| |||| || || Sbjct 251557 CTGCCGTTCATCCATAAACATGTCGCGGTCATGCCCGACGTGCACTGGGGCATGGGGGCG 251616 Query 52059 TCTGTTGGTACCGTCATCCCCACCCGCGGCGCAGTCATCCCCGCCGCGGTCGGTGTCGAC 52118 | || ||| |||| ||||| ||| || || |||| |||||||| || || || ||| Sbjct 251617 ACGGTGGGTTCCGTGATCCCGACCGTGGGGGCGATCATTCCCGCCGCCGTGGGCGTGGAC 251676 Query 52119 ATCGGCTGCGGCATGATCGC 52138 ||||||||||||||||| || Sbjct 251677 ATCGGCTGCGGCATGATGGC 251696 >seq998 Length=1052685 Score = 82.4 bits (90), Expect = 3e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 595 TAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTGC 652 ||||||| ||||||||||| ||||||||||||||| ||| ||||||||||||||||| Sbjct 267584 TAGCTCAGTTGGTAGAGCATCGGTCTCCAAAACCGAGGGTCGCAGGTTCGAGTCCTGC 267641 >seq316 Length=8699 Score = 82.4 bits (90), Expect = 3e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 595 TAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTGC 652 ||||||||||||||||||| ||||||||||||||| ||| ||||||||||| ||||| Sbjct 929 TAGCTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGGGTCGCAGGTTCGAGCCCTGC 986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201442719763128