Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_024366.1 Length=62661 Score E Sequences producing significant alignments: (Bits) Value seq97 122 3e-23 seq998 84.2 9e-12 seq316 84.2 9e-12 >seq97 Length=479585 Score = 122 bits (134), Expect = 3e-23 Identities = 127/164 (77%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 36570 CACCCTAGTGGCGTGGAGTGCATCACGATCACCGAGCACATGGGCTTCAACCTCGGCAAC 36629 ||||| || || | || |||||| ||| ||||||| ||| ||||||| ||||| || Sbjct 255893 CACCCAAGCGGTATCGAATGCATCCAGATAGCCGAGCATATGAGCTTCAATCTCGGAAAT 255834 Query 36630 GCCGTCAAATACATCTGGCGCTGCGACCTGAAACGCGACGCGATCGAGGATCTGAAAAAG 36689 ||| | |||||||||||||||||||| ||||| | ||||| || || || ||| | || Sbjct 255833 GCCCTAAAATACATCTGGCGCTGCGATCTGAAGCAAGACGCAATTGAAGACCTGGAGAAA 255774 Query 36690 GCCGCGTT-CTACGTCGACCGTGAAATCGCGAAGCGTGAGCGGG 36732 ||| |||| ||| ||||||| |||||| |||||| |||||| Sbjct 255773 GCC-CGTTGGTACATCGACCGGGAAATCAAGAAGCGAAAGCGGG 255731 >seq998 Length=1052685 Score = 84.2 bits (92), Expect = 9e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 828 GTAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTGC 886 |||||||| ||||||||||| ||||||||||||||| ||| ||||||||||||||||| Sbjct 267583 GTAGCTCAGTTGGTAGAGCATCGGTCTCCAAAACCGAGGGTCGCAGGTTCGAGTCCTGC 267641 >seq316 Length=8699 Score = 84.2 bits (92), Expect = 9e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 828 GTAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTGC 886 |||||||||||||||||||| ||||||||||||||| ||| ||||||||||| ||||| Sbjct 928 GTAGCTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGGGTCGCAGGTTCGAGCCCTGC 986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200386739055258