Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq890 208 8e-49 seq1482 150 2e-31 seq743 147 2e-30 >seq890 Length=125401 Score = 208 bits (230), Expect = 8e-49 Identities = 381/552 (69%), Gaps = 26/552 (5%) Strand=Plus/Minus Query 142241 TCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGA 142300 ||||||||| ||||| || || ||||||| | ||||| || | || |||| |||| Sbjct 47693 TCTTCGGTCGCCAGATTCGCTTTGATCTGGCCAAGGGCTTCCCCGTCCTGACCACCAAGA 47634 Query 142301 AGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACA 142360 ||||||| ||| ||||||||| ||||||| ||||||||||| ||||| || |||| Sbjct 47633 AGCTGCACCTGCGTTCGATCATCATCGAACTGCTGTGGTTCCTGCGCGGCGAGACCAACA 47574 Query 142361 TCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCA 142420 || | || | || || |||| ||||||||||||||||| || ||| | ||| Sbjct 47573 TCGGCTGGCTCAAGGAGAACGGCGTCCGCATCTGGGATGAATGGGCAGACGCCGAGGGCG 47514 Query 142421 ACCTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAG 142480 | || || || ||||| |||||||||||| || ||||| | ||| ||| Sbjct 47513 AGCTTGGCCCCGTCTATGGCAAGCAGTGGCGCTCGTGGAC----------GGCGCCGGA- 47465 Query 142481 ATGACGTCACAGACGAACCGATCGATCAGATCCGCCGGATCATTACTGACTTGAAGAAGT 142540 | || | || ||| | |||| ||| | || || || | | | |||| Sbjct 47464 CGGCCGCCTCA-TCGACCAAATCG---AGA--AACTGGTTC---ACGGGC-TCAAGACCA 47415 Query 142541 CTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATGG 142600 ||| | |||||| |||||||||| ||| |||||||| || || || |||||||||| Sbjct 47414 ATCCGAACGGTCGTCGCCACATCGTCAGCGCCTGGAACCCGGCGGACGTGGACGACATGG 47355 Query 142601 CACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCG-ACTCGAAGAAGCGTCTGTCA 142659 | || || ||||| ||| ||||||| ||| ||||| | || | || || Sbjct 47354 CCCTGCCGCCGTGCCACTGCCTGTTCCAGTTCTTCGTCGCAGACGGAAAA----CTCAGC 47299 Query 142660 TGCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCG 142719 |||||||||||||||||| || ||| ||||| ||||| ||||||||||| || || Sbjct 47298 TGCCAGCTGTATCAGCGTAGCGCCGACATCTTCCTGGGCGTGCCGTTCAACATCGCCTCC 47239 Query 142720 TACGCGCTTCTCACACAGCTCATTGCTCGCGAATGCGGTCTGGAACTCGGAGACTTCGTC 142779 ||||| || || || | | | | || | | |||||||| | || || |||||| Sbjct 47238 TACGCCCTGCTGACCCTGATGGTGGCCCAGGTCGTGGGTCTGGAGCCGGGCGAGTTCGTC 47179 Query 142780 CACACCTTCGGC 142791 || ||||||||| Sbjct 47178 CATACCTTCGGC 47167 >seq1482 Length=483770 Score = 150 bits (166), Expect = 2e-31 Identities = 333/495 (67%), Gaps = 32/495 (6%) Strand=Plus/Plus Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAG 142302 ||||| ||||||| ||| |||| |||| ||| || || || ||| | ||||||||| Sbjct 421465 TTCGGCCATCAGACGCGCCACAATTTGGCCGCAGGATTCCCGCTGCTCACGACGAAGAAG 421524 Query 142303 CTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATC 142362 || || || |||||| || || || || ||||| || || ||||| || |||||| Sbjct 421525 CTATCCCTCAAATCGATCGTCCATGAGCTGCTCTGGTTTCTGAAGGGCGACACCAACATC 421584 Query 142363 AAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAAC 142422 ||||| || | || ||| |||| |||||||||||| ||||| || | || ||| | Sbjct 421585 AAGTACCTCAAGGACCACGGCGTCTCGATCTGGGATGAGTGGGCGGACGAGAACGGCGAT 421644 Query 142423 CTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAGAT 142482 ||||| || ||||| || ||||||| || ||| | || ||| || Sbjct 421645 CTCGGTCCGGTCTATGGTTCGCAGTGGCGTTCATGG------CCCG----CGCCGG---- 421690 Query 142483 GACGTCACAGACGAACCGATCGATCAGATCCGCCGGATCATTACTGACTTGA---AGAAG 142539 || | || | | ||||||||||| |||| | | | || ||| | Sbjct 421691 ------ACGGCCGCAGC-ATCGATCAGAT-CGCC--AACGTCGTCGAGATGATCCGGCGC 421740 Query 142540 TCTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATG 142599 ||| |||| || || | |||||| | |||||||| || || || ||||| | ||| Sbjct 421741 AATCCGGATTCGCGGCGGCTGATCGTCTCGGCGTGGAATCCCGCCGAGGTCGATAAGATG 421800 Query 142600 GCACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGAC-TCGAAGAAGCGTCTGTC 142658 || || || ||||| || |||| || ||| | |||| | || || ||||| Sbjct 421801 GCGCTGCCCCCGTGCCATTGCCTGTTTCAGTTCTATGTCGCCAACGGCAAA----CTGTC 421856 Query 142659 ATGCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTC 142718 |||||||| |||||||| || || || ||||||||||| ||||||||||| || || Sbjct 421857 GTGCCAGCTCTATCAGCGCTCCGCTGATGTCTTCCTCGGCGTGCCGTTCAACATCGCATC 421916 Query 142719 GTACGCGCTTCTCAC 142733 || ||||| || || Sbjct 421917 CTATGCGCTGCTGAC 421931 >seq743 Length=263205 Score = 147 bits (162), Expect = 2e-30 Identities = 328/494 (66%), Gaps = 30/494 (6%) Strand=Plus/Minus Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAG 142302 ||||||||||||||||| ||||| || || || ||||| | | || || ||| Sbjct 73453 TTCGGTCATCAGATGCGCTTCAACCTCGCCGCCGGTTTTCCGATGACGACGACCAAAAAG 73394 Query 142303 CTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATC 142362 |||| | ||| |||| || |||||| |||||||| ||| ||||| || ||| | Sbjct 73393 CTGCCGTTCAAGGCGATTGTCCACGAACTGCTGTGGTTTCTCGCCGGCGACACCAACGTG 73334 Query 142363 AAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAAC 142422 ||||| || || | |||| |||||||| || ||||| || ||||| || | Sbjct 73333 CGCTATCTGCAGAATAATGGTGTCACCATCTGGGACGAGTGGGCGGACGCCAACGGGGAT 73274 Query 142423 CTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAGAT 142482 || || || |||||||||||||||||| || ||| | ||| ||| | Sbjct 73273 CTTGGTCCGGTCTACGGCAAGCAGTGGCGCTCATGGCAGG----------CGCCGGA--T 73226 Query 142483 GACGTCACAGACGAACCGATCG---ATCAGATCCGCCGGATCATTACTGACTTGAAGAAG 142539 | | || ||| | ||||| | | |||||| |||| || Sbjct 73225 GGCCGCAGCATCGACCAGATCGCGAACCTCATCCGCATGATCCGCACCA----------- 73177 Query 142540 TCTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATG 142599 | || |||| || || | ||||||| ||| ||||| || || || ||||| ||||| Sbjct 73176 -CGCCGGATTCGCGGCGGCTGATCGTCAGCGCATGGAATCCGGCCGATGTCGATCACATG 73118 Query 142600 GCACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAGAAGCGTCTGTCA 142659 || || || || || || ||||||| ||| |||||| |||| || || Sbjct 73117 GCGCTGCCGCCATGCCATTGCCTGTTCCAGTTCTACGTCG---CGAACGGCAAACTCTCG 73061 Query 142660 TGCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCG 142719 |||||||| |||||||||||||| ||| ||| |||||||| ||||||||||| || || Sbjct 73060 TGCCAGCTCTATCAGCGTTCGGCCGACGTGTTTCTCGGCGTGCCGTTCAACATCGCGTCC 73001 Query 142720 TACGCGCTTCTCAC 142733 || ||||| || || Sbjct 73000 TATGCGCTGCTGAC 72987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500489821896240