Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq890 154 2e-32 seq1482 125 8e-24 seq743 125 8e-24 >seq890 Length=125401 Score = 154 bits (170), Expect = 2e-32 Identities = 183/248 (74%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 146926 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTA 146985 |||| ||||| || || | ||| ||||| || | ||| || || || || ||||||| Sbjct 47138 TCCAGATGGTTCAGATACAGGTGGGCGTCGCCGAAGGTATGGACGAACTCGCCCGGCTCC 47197 Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 || || || ||||||||||| ||| ||||| | |||| ||| |||||||| || Sbjct 47198 AGACCCACGACCTGGGCCACCATCAGGGTCAGCAGGGCGTAGGAGGCGATGTTGAACGGC 47257 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCC 147105 || |||||| ||||| | | ||| ||||||||||| ||| | ||||| || Sbjct 47258 ACGCCCAGGAAGATGTCGGCGCTACGCTGATACAGCTGGCAGCTGAGTTTTCCGTCTGCG 47317 Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGG 147165 ||| | |||||| ||||| ||||||||||||||| |||||| || || |||||| ||| Sbjct 47318 ACGAAGAACTGGAACAGGCAGTGGCACGGCGGCAGGGCCATGTCGTCCACGTCCGCCGGG 47377 Query 147166 TTCCAGGC 147173 |||||||| Sbjct 47378 TTCCAGGC 47385 >seq1482 Length=483770 Score = 125 bits (138), Expect = 8e-24 Identities = 174/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 146947 TGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACC 147006 |||||||| ||||| ||||| | || || |||| || | |||||| || || || ||| Sbjct 421997 TGCGCGTCACCCAGCGTGTGAATGAATTCGCCCGCTTTCAAGCCGGTGACCTGTGCGACC 421938 Query 147007 ATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCC 147066 || || ||||||| ||| || |||||||| || || || ||| | || | Sbjct 421937 ATCATCGTCAGCAGCGCATAGGATGCGATGTTGAACGGCACGCCGAGGAAGACATCAGCG 421878 Query 147067 GACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATG 147126 || | ||| || ||||||||||| || | |||| ||| || || ||||| ||||| Sbjct 421877 GAGCGCTGATAGAGCTGGCACGACAGTTTGCCGTTGGCGACATAGAACTGAAACAGGCAA 421818 Query 147127 TGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGC 147186 |||||||| ||||||||||| | || ||||| ||||| |||||||| | |||| Sbjct 421817 TGGCACGGGGGCAGCGCCATCTTATCGACCTCGGCGGGATTCCACGCCGAGACGATCAGC 421758 Query 147187 CGCC 147190 |||| Sbjct 421757 CGCC 421754 >seq743 Length=263205 Score = 125 bits (138), Expect = 8e-24 Identities = 188/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 146924 GCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCT 146983 |||||| |||||| || | |||||||| || || ||||| | || || |||||| Sbjct 72898 GCTCCAGATGGTTGGAATACAGATGCGCGTCGCCGAGCGTGTGGATGAAATCGCCCGGCG 72957 Query 146984 TAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGG 147043 ||| | ||||| || || | ||| || ||||||| ||| || |||||||| | Sbjct 72958 CAAGATCCGTCACCTGTGCGATCATCATCGTCAGCAGCGCATAGGACGCGATGTTGAACG 73017 Query 147044 GGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGG 147103 | || || || || ||| |||| | ||| || |||||||||||||| | |||| | Sbjct 73018 GCACGCCGAGAAACACGTCGGCCGAACGCTGATAGAGCTGGCACGAGAGTTTGCCGTTCG 73077 Query 147104 CCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGG 147163 | ||||| |||||| ||||| ||||| ||||||||||||||| | || || | Sbjct 73078 CGACGTAGAACTGGAACAGGCAATGGCATGGCGGCAGCGCCATGTGATCGACATCGGCCG 73137 Query 147164 GGTTCCAGGCCGAGACCACCAGCCGCC 147190 | ||||| || ||| | |||||||| Sbjct 73138 GATTCCATGCGCTGACGATCAGCCGCC 73164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583477066893600