Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_026594.1
Length=56537
Score E
Sequences producing significant alignments: (Bits) Value
seq845 132 2e-26
seq812 114 5e-21
seq743 104 8e-18
seq713 93.3 2e-14
>seq845
Length=164897
Score = 132 bits (146), Expect = 2e-26
Identities = 290/430 (67%), Gaps = 6/430 (1%)
Strand=Plus/Minus
Query 36693 GTTCGAGCTGACCGTCTCCCTCGGCCCTGCGGGCACCGGGAAGACCTTCCTGGCCATTCA 36752
|| |||||||||| || | |||| |||||||||||||| ||||| || |||||
Sbjct 111587 GTGCGAGCTGACCTTCGGCGTCGGGCCTGCGGGCACCGGCAAGACGTTTCTGGCGGCGGC 111528
Query 36753 CCACGGACTGCGCCTGCTGGAGGCCAAGGAAA--TCCAGCGACTCGTCATCACTCGCCCC 36810
| | || ||||||| | | ||| | | | || || |||||||| |||||
Sbjct 111527 CTATGGCGCATCCCTGCTGCGGCGC--GGACAGGTGGACCGGCTGGTCATCACCCGCCCG 111470
Query 36811 GCCGTCGAGGCCGAGGAGAAGCTCGGCTACCTGCCCGGCGGCATCGAAGAGAAGATGGCT 36870
|| || ||||| | |||||||| |||| ||||||||||| | | | |||||| | |
Sbjct 111469 GCGGTTGAGGCGGGCGAGAAGCTGGGCTTCCTGCCCGGCGACCTGAACGAGAAGGTCGAC 111410
Query 36871 CCGTACCTGATCCCGATGCTGGACGCGGTGATCGACCTGGTTGGC-CCGACGATGGCCAA 36929
|| || ||| |||||| ||| ||| ||| ||| | | ||| |||| || | | |
Sbjct 111409 CCCTATCTGGCCCCGATCTGGGAGGCGCTGAACGATATTCTGGGCGCCGAGGACGTGC-A 111351
Query 36930 GCGCCTGCAGGAGACCCGCCAGCTCGAGATCGCCCCGCTGGCCTACATGCGAGGCCGAAC 36989
||||| | || | || || |||| |||||| | |||| |||||| ||||| ||
Sbjct 111350 GCGCCGACGCGACAAGGGCGAGATCGAAGCCGCCCCCATCGCCTTCATGCGCGGCCGCAC 111291
Query 36990 CTTCAACGACACGTTCCTCATCGCCGACGAGATGCAGAACGCCACCCCGCGACAGGCCGC 37049
| | | | || | ||| |||||| |||||| |||||| || | | | |||
Sbjct 111290 CCTGAGCCACGCCTTCGTCATCGTGGACGAGGCCCAGAACACCTCGCGTCTGCAGATGAA 111231
Query 37050 GCTGCTGGTGACCCGCCTGGGCTTCGGAACGCGGGCCGTCTTGAACGGTGACCCGGCCCA 37109
| || || ||||||| |||||| || ||||| || ||| || |||||| | ||
Sbjct 111230 GATGGTGCTGACCCGTCTGGGCGAGGGCGCGCGGATGGTGGTGACGGGCGACCCGTCGCA 111171
Query 37110 GTGCGACCTC 37119
| |||||||
Sbjct 111170 GATCGACCTC 111161
>seq812
Length=1388629
Score = 114 bits (126), Expect = 5e-21
Identities = 231/341 (68%), Gaps = 4/341 (1%)
Strand=Plus/Plus
Query 36696 CGAGCTGACCGTCTCCCTCGGCCCTGCGGGCACCGGGAAGACCTTCCTGGCCATTCACCA 36755
|||| |||| || | ||||||| || |||||||| ||||||| || || | ||
Sbjct 369806 CGAGTTGACGTTCGGCATCGGCCCCGCCGGCACCGGCAAGACCTGGCTTGCGGTGGCGCA 369865
Query 36756 CGGACTGCGC--CTGCTGGAGGCCAAGGAAATCCAGCGACTCGTCATCACTCGCCCCGCC 36813
| | |||| ||| | ||| ||||||| || | || || | | || || |||||
Sbjct 369866 GG--CGGCGCAACTGTTCGAGCGCAAGGAAGTCGATCGCATCATTCTGACGCGGCCCGCG 369923
Query 36814 GTCGAGGCCGAGGAGAAGCTCGGCTACCTGCCCGGCGGCATCGAAGAGAAGATGGCTCCG 36873
|| || |||| || |||||||| ||||||||||| | | || ||| | | |||
Sbjct 369924 GTGGAAGCCGGCGAACGGCTCGGCTTCCTGCCCGGCGACCTGCGCGAAAAGGTCGATCCT 369983
Query 36874 TACCTGATCCCGATGCTGGACGCGGTGATCGACCTGGTTGGCCCGACGATGGCCAAGCGC 36933
|| || |||||| || ||| || ||| ||| | | || || | | |||||
Sbjct 369984 TATCTTCGCCCGATCTACGATGCGCTGTACGATCTGATGGATTCGCGCATCGTCGAGCGC 370043
Query 36934 CTGCAGGAGACCCGCCAGCTCGAGATCGCCCCGCTGGCCTACATGCGAGGCCGAACCTTC 36993
| | ||||| || || |||||||||| |||||||| | |||||| ||||| ||| |
Sbjct 370044 GCGTTGCAGACCGGCGAGATCGAGATCGCGCCGCTGGCTTTCATGCGCGGCCGCACCCTG 370103
Query 36994 AACGACACGTTCCTCATCGCCGACGAGATGCAGAACGCCAC 37034
| | || | | ||||| ||||||| ||||||| ||||
Sbjct 370104 ACCAACGCCGCCATCATCCTCGACGAGGCGCAGAACACCAC 370144
>seq743
Length=263205
Score = 104 bits (114), Expect = 8e-18
Identities = 306/466 (66%), Gaps = 17/466 (4%)
Strand=Plus/Plus
Query 4529 CTGATCGTG---GACGAGTCGTCCATGGTCGACGAGTCGGTC--GGTGAAGACCTCCTGT 4583
||||||||| ||||| | || |||||||| | || || || ||||| |||
Sbjct 181876 CTGATCGTGATCGACGAATGTTCGATGGTCGATGC--CGATCTTGGGCGCGACCTGATGT 181933
Query 4584 CGTTCGGTGTGCCAATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCGGTGGCCGGGG 4643
|||||| || | || | || ||||| ||||| ||| |||| ||| | || ||||
Sbjct 181934 CGTTCGACTGCCCTCTGCTGGTGCTCGGCGATCCCGCACAGTTGCCACCGATCGCGGGGG 181993
Query 4644 CTGGATTCTTCACC-AAGCAGAAGGCCGACTTCCTGCTGACCGACATCCACCGCCAGGCC 4702
|| ||||||||| |||| ||| ||||| |||||||||| | || ||||||||
Sbjct 181994 GCGGCTTCTTCACCGAAGCGGAAC-CCGACGCTATGCTGACCGAGGTACATCGCCAGGCG 182052
Query 4703 CGCGACAACCCCATCATTGAGATGTC----GCGCATCGTCCGCGAGGGTGGAACCCTGAA 4758
| || | || ||| | ||||| ||| || |||||||| | | || |
Sbjct 182053 CAGAACGATCCGATCGTGCGCATGTCAATGGCG----GTGCGCGAGGGCCGTGCATTGGA 182108
Query 4759 CCTGGGCCGCTACGGAGACAGCGAAGTCGTCCGGGGCGCTGACTTCCAGCGCGACTGGGT 4818
|||| | ||| ||||||||||| || | || | | || | | ||| | ||
Sbjct 182109 GAACGGCCAGTTCGGTGACAGCGAAGTGGTGAGCCGCAACGGCCTCGATCCAGACCGCGT 182168
Query 4819 ATTCCAGGCTGACCAGATTCTCGTCGGGAAAAACGACACCCGCCGAGCCTACAACGCTCG 4878
| ||| ||||||||||| |||||| ||| |||| ||||| ||||||||| ||
Sbjct 182169 GATGGCGGCAGACCAGATTCTGGTCGGGCGCAACAACACGCGCCGCGCCTACAACATGCG 182228
Query 4879 CATCCGCGAGCTGCGCGGGGCCGACCGAGCTTACCCTCTCAAGGGCGACAAGCTGGTCTG 4938
| || || ||| ||| || | || | ||||||||||||||||||
Sbjct 182229 GGTGCGACAGAAAAACGGAATCGAAGATGCATTGCCGGTGGCGGGCGACAAGCTGGTCTG 182288
Query 4939 CCTTCGCAACAACCACGACTCGGGCCTGCTGAACGGCTCCCTCTGG 4984
||| |||||||||| | | || ||| | |||||| ||| |||
Sbjct 182289 CCTGCGCAACAACCGCAAGAAGGCGCTGTTCAACGGCGGCCTGTGG 182334
Score = 86.0 bits (94), Expect = 2e-12
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 4175 TTCCGCCTGTTCGGGTATGCCGGCACGGGCAAGACCACCCTGGCCCGCCACATCGCTGAG 4234
|||||||||||||| |||||||| || |||||||||||||| ||||| || ||||| ||
Sbjct 181639 TTCCGCCTGTTCGGCTATGCCGGGACCGGCAAGACCACCCTCGCCCGTCATATCGCCGAT 181698
Query 4235 AACGTGGACGGGCTTGTGCTGTTCGCCGCCCCGACCGGCAAGGCCGC 4281
||| | || ||| |||||| || ||||||||||||||
Sbjct 181699 GCCGTCAATGGCGAGGTGAAGTTCGCTGCTTTCACCGGCAAGGCCGC 181745
>seq713
Length=1192841
Score = 93.3 bits (102), Expect = 2e-14
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 4175 TTCCGCCTGTTCGGGTATGCCGGCACGGGCAAGACCACCCTGGCCCGCCACATCGCTGAG 4234
|||||||||||||| || |||||||| ||||||||||| ||||| || || ||||| ||
Sbjct 113726 TTCCGCCTGTTCGGCTACGCCGGCACCGGCAAGACCACACTGGCGCGACATATCGCGGAC 113667
Query 4235 AACGTGGACGGGCTTGTGCTGTTCGCCGCCCCGACCGGCAAGGCCGCCTACGTCCTGAAG 4294
||| ||||| ||| ||||||||| ||||| ||||| || || ||
Sbjct 113666 GGCGTCGACGGCGAAGTGAAATTCGCCGCCTTCACCGGAAAGGCGGCGCTGGTGATGCGC 113607
Query 4295 ACCAAGGGCTGCCCGAACACCAGCACGATCCACCAGCTGATCTA 4338
| |||||||||| ||| || ||||| ||| ||||||||
Sbjct 113606 AACAAGGGCTGCGACAACGCCTCGACGATTCACTCCCTGATCTA 113563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 180793581703962
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |