Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_027204.1 Length=194701 Score E Sequences producing significant alignments: (Bits) Value seq1482 107 2e-18 seq713 93.3 5e-14 seq890 84.2 3e-11 >seq1482 Length=483770 Score = 107 bits (118), Expect = 2e-18 Identities = 181/262 (69%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 176401 CCTGATCGAAGTGATTGTTATAGATGTGGGTATCACCAAGGTTGCCGATCAGTTCCCCGA 176460 |||| || | |||||| ||| | || | ||||| || || || | ||| || Sbjct 422023 CCTGTTCCAGATGATTGGAATAAAGATGCGCGTCACCCAGCGTGTGAATGAATTCGCCCG 421964 Query 176461 CTTCCAAGCCGCATTCCAGCGCGATCAGATGTGTCAGGAGTGCGTAAGAGGCGATGTTGA 176520 ||| ||||||| || | |||| || ||||| || || || || |||||||||| Sbjct 421963 CTTTCAAGCCGGTGACCTGTGCGACCATCATCGTCAGCAGCGCATAGGATGCGATGTTGA 421904 Query 176521 ATGGAAGCCCCAAGAAGACGTCCACGGACCGCTGATTCCAAAGGCAGGACAGTTTCCCGT 176580 | || | || | |||||| || |||| ||||||| |||| |||||||| |||| Sbjct 421903 ACGGCACGCCGAGGAAGACATCAGCGGAGCGCTGATAGAGCTGGCACGACAGTTTGCCGT 421844 Query 176581 TGCGGACATAGAACTGGAAACCGTAGTGACACGGCGGCAAAGCCATTAGATCGACCGCCC 176640 || |||||||||||| || | | || ||||| |||| ||||| ||||||| | Sbjct 421843 TGGCGACATAGAACTGAAACAGGCAATGGCACGGGGGCAGCGCCATCTTATCGACCTCGG 421784 Query 176641 CGACATTCCAAGCCGAGACCAT 176662 || |||||| |||||||| || Sbjct 421783 CGGGATTCCACGCCGAGACGAT 421762 >seq713 Length=1192841 Score = 93.3 bits (102), Expect = 5e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 148951 AAAGCTTCTTGTGCTGGACGAATGTTCGATGGTCAATGCGGAAATGCTTCTTGACTTGTT 149010 |||||| | || | |||||||| ||||||||| |||| ||| | | ||| || | Sbjct 113493 AAAGCTGATCGTCATCGACGAATGCTCGATGGTCGATGCCGAACTCGGCCGCGACCTGAT 113434 Query 149011 TACATTCGAAATTCCGATGCTGGTGTTAGGCGATCCCGGACAGCTTCCGCCAATCGAAGG 149070 | |||||| |||| | ||||| | |||||||||| ||||||||||| || |||| Sbjct 113433 GTCGTTCGAATGTCCGCTATTGGTGCTCGGCGATCCCGCGCAGCTTCCGCCGATTCAAGG 113374 Query 149071 CAGGAGTCCGCTTACCGATGTTCG-CCCGGATGCTATGTTGACGGAAATCCATCGACAGG 149129 | | || | |||||| | || ||||| || ||| |||| ||| | ||||| |||| Sbjct 113373 CGGCGGTTTTTTCACCGAT-TCCGAGCCGGACGCGATGCTGACCGAAGTGCATCGTCAGG 113315 Query 149130 CAGAAGGCAATCCGATCATC 149149 | || | |||||||| || Sbjct 113314 CCGAGCACGATCCGATCGTC 113295 >seq890 Length=125401 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 176493 GTCAGGAGTGCGTAAGAGGCGATGTTGAATGGAAGCCCCAAGAAGACGTCCACGGACCGC 176552 ||||| || ||||| |||||||||||||| || | |||| ||||| ||| || ||| Sbjct 47225 GTCAGCAGGGCGTAGGAGGCGATGTTGAACGGCACGCCCAGGAAGATGTCGGCGCTACGC 47284 Query 176553 TGATTCCAAAGGCAGGACAGTTTCCCGT-TGCGGACATAGAACTGGAAACCGTAGTGACA 176611 |||| | ||||| ||||| |||| ||| ||| |||||||||| | |||| || Sbjct 47285 TGATACAGCTGGCAGCTGAGTTTTCCGTCTGC-GACGAAGAACTGGAACAGGCAGTGGCA 47343 Query 176612 CGGCGGCAAAGCCAT 176626 |||||||| ||||| Sbjct 47344 CGGCGGCAGGGCCAT 47358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622903528126440