Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_027402.1 Length=240413 Score E Sequences producing significant alignments: (Bits) Value seq890 100 4e-16 seq743 93.3 6e-14 >seq890 Length=125401 Score = 100 bits (110), Expect = 4e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 198335 TGTCAGCTCTATCAACGCAGTGCGGATTTTTTCCTCGGCGTGCCGTTCAACATCGCGTCT 198394 || ||||| ||||| || || || || | ||||| |||||||||||||||||||| || Sbjct 47298 TGCCAGCTGTATCAGCGTAGCGCCGACATCTTCCTGGGCGTGCCGTTCAACATCGCCTCC 47239 Query 198395 TACGCATTACTCGTGCACATGGTTGCCCAGCAGGTTAACATGGTGCCGGGCGATTTCATT 198454 ||||| | || | ||||| |||||| || ||| ||||||||| ||| | Sbjct 47238 TACGCCCTGCTGACCCTGATGGTGGCCCAGGTCGTGGGTCTGGAGCCGGGCGAGTTCGTC 47179 Query 198455 TGGACGGGCGGTGACACACATCTCTACTCT-AATCATCTGGAGCAGGCCAAGCTCCAGCT 198513 || ||| ||| | || || || ||| || |||||||| |||||| | || ||||| Sbjct 47178 CATACCTTCGGCGACGCCCACCTGTA-TCTGAACCATCTGGAACAGGCCGAACTTCAGCT 47120 Query 198514 GACGCGTGAGCC 198525 |||||| ||||| Sbjct 47119 GACGCGCGAGCC 47108 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 197668 CGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTGCG 197727 ||| || || || || || || || ||||| || |||||||| || |||||| || Sbjct 47722 CGACCGCACCGGCACCGGCACCCTGGGCGTCTTCGGTCGCCAGATTCGCTTTGATCTGGC 47663 Query 197728 TAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAACT 197787 || || ||||| | | || || ||||| || ||||||||||| || ||| ||||| Sbjct 47662 CAAGGGCTTCCCCGTCCTGACCACCAAGAAGCTGCACCTGCGTTCGATCATCATCGAACT 47603 Query 197788 GCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACCAT 197847 |||||||||||| | || || ||||||| | | || | || |||||||| ||| Sbjct 47602 GCTGTGGTTCCTGCGCGGCGAGACCAACATCGGCTGGCTCAAGGAGAACGGCGTCCGCAT 47543 Query 197848 TTGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCCCCTGTATGG 197895 ||| || ||| ||| | | || | ||||||||| | ||||| Sbjct 47542 CTGGGATGAATGGGCAGACGCCGAGGGCGAGCTTGGCCCCGTCTATGG 47495 >seq743 Length=263205 Score = 93.3 bits (102), Expect = 6e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 198329 CTTTCATGTCAGCTCTATCAACGCAGTGCGGATTTTTTCCTCGGCGTGCCGTTCAACATC 198388 || || || ||||||||||| || || || | || ||||||||||||||||||||| Sbjct 73066 CTCTCGTGCCAGCTCTATCAGCGTTCGGCCGACGTGTTTCTCGGCGTGCCGTTCAACATC 73007 Query 198389 GCGTCTTACGCATTACTCGTGCACATGGTTGCCCAGCAGGTTAACATGGTGCCGGGCGAT 198448 ||||| || || | || | ||| | || ||| | | | | |||||||||| Sbjct 73006 GCGTCCTATGCGCTGCTGACGATGATGATCGCACAGGTGACGGATCTTGCGCCGGGCGAT 72947 Query 198449 TTCATTTGGACGGGCGGTGACACACATCTCTACTCTAATCATCTGGAGCAGGCCAAGCTC 198508 ||||| ||| ||| ||| | ||||| || || || |||||||||||||| || Sbjct 72946 TTCATCCACACGCTCGGCGACGCGCATCTGTATTCCAACCATCTGGAGCAGGCGCGCCTG 72887 Query 198509 CAGCTGACGCG 198519 || |||||||| Sbjct 72886 CAACTGACGCG 72876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769179187234920