Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq773 91.5 2e-13 seq724 86.0 8e-12 >seq773 Length=230076 Score = 91.5 bits (100), Expect = 2e-13 Identities = 239/358 (67%), Gaps = 14/358 (4%) Strand=Plus/Minus Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCA 14167 ||||| ||||||||||| | | ||| || ||||| ||||| || |||||||| Sbjct 177172 CGGTTGGTCGCCGCGATCAGGATGAT---CGATTCGTTGGCTTCAAAACCGTCCATCTCG 177116 Query 14168 GTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCAGGC-ATACCACCCGCA 14224 || || || |||| ||| ||||||||||| ||||| ||| | | | |||| || Sbjct 177115 ACCAGCAGCTGGTTGAGGGTCTGTTCGCGTTCGTCATTACCGCCGCCGAGACCA---GCG 177059 Query 14225 CTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCA 14284 | ||| || ||||||||| || ||||| |||||||| | ||| || || ||| | Sbjct 177058 CCGCGATGACGACCGACGGCATCGATTTCGTCGATGAAGATGATGCAAGGCGCATTCTTC 176999 Query 14285 CGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACA 14344 ||| ||| || || || || || | | || ||||| || || ||||| || || Sbjct 176998 TTGGCCTGTTCGAACATGTCACGGACACGGCTCGCGCCGACGCCGACGAACATTTCAACG 176939 Query 14345 AAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGC 14403 || | | ||||| || | || ||| || || || | ||| || || | | || || Sbjct 176938 AAGTCCGAACCGGAA-ATGGTGAAGAACGGCACATTCGCTTCGCCTGCAACAGAGCGCGC 176880 Query 14404 GAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTG 14461 || || ||||| || || || || || |||| || | ||||| || ||| || Sbjct 176879 CAGAAGCGTCTTACCGGTGCCGGGAGGGCCCACGAGCAGCACGCCACGCGGAATCTTG 176822 >seq724 Length=279373 Score = 86.0 bits (94), Expect = 8e-12 Identities = 328/506 (65%), Gaps = 22/506 (4%) Strand=Plus/Minus Query 14056 GATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTT 14115 || || ||| || || || || || || || ||||| ||| || | || |||||| Sbjct 7146 GACCTGACGGTCGAAACGGCCGGGACGCAGCAGGGCCGGGTCCAGCACGTCGGGGCGGTT 7087 Query 14116 CGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAA 14172 || || ||||| | | |||| ||||| || |||||||||||||| || Sbjct 7086 GGTGGCGGCGATCAGGATGATGT---TCTCGGAGGCTTCGAAGCCATCCATCTCGACCAG 7030 Query 14173 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGCGT 14230 || || || | ||| || ||||| || || || | || ||| || || | ||| Sbjct 7029 CAGCTGGTTCAGGGTCTGCTCGCGCTCGTCGTTGCC--GCCGCCCAGGCCTGCGCCGCGA 6972 Query 14231 TGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGG----TTGATTTTCACG 14286 || ||||||||||| |||||||||||||| | ||| || || || ||||| Sbjct 6971 TGACGGCCGACGGCGTCGATTTCATCGATGAAGATGATGCACGGAGCATTCTTTTTC--- 6915 Query 14287 GGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 || ||| || || || || || | |||| ||||| || || ||||| || || || Sbjct 6914 -GCTTGTTCGAACATGTCGCGGACGCGGCTGGCGCCGACGCCGACGAACATTTCGACGAA 6856 Query 14347 ATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGA 14405 | | | | | || | || |||||| ||| | |||||||||| || ||||| | Sbjct 6855 GTCCGAACCCG-AGATCGAGAAGAAGGGCACGCCCGCCTCACCCGCGACCGCGCGGGCCA 6797 Query 14406 GGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCAC 14465 | || ||||| || || || || || | || ||||| || |||||| || | | Sbjct 6796 GCAGCGTCTTGCCGGTGCCGGGAGGGCCGACCAGCAGGGCGCCCTTGGGGATCTTGCCGC 6737 Query 14466 CACTGCCAAAGTAGCGT-TCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCC 14524 | | | | | | | | | || | || |||||||| |||| || | || ||| ||| Sbjct 6736 C-CAGACGCTGGAACTTGCCCGGATCCTTCAGGAAGTCGACGACCTCCTGCAGTTCGTCC 6678 Query 14525 TTCGCGGCGTCGATGCCTTCAACGTC 14550 || || | |||| |||| | || || Sbjct 6677 TTGGCCTCATCGACGCCTGCGACATC 6652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618423612070440