Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq79 109 6e-19 >seq79 Length=12267 Score = 109 bits (120), Expect = 6e-19 Identities = 328/502 (65%), Gaps = 16/502 (3%) Strand=Plus/Plus Query 9518 ATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTC 9577 |||| || ||||| ||||| || | ||| || || ||| |||| || || || Sbjct 1666 ATCTGTCGGTCAAAACGACCAGGTCTAAGTAGTGCTGGATCTAGGACGTCTGGACGGTTA 1725 Query 9578 GTCGCGGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAAA 9634 || || || || | | | |||| |||||| || |||||||||||||| || Sbjct 1726 GTTGCAGCAATTATTATCACACCT---TCATTAGACTCGAAACCATCCATCTCAACCAGT 1782 Query 9635 AGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA-TACCACCAGCACTGCGTTG 9693 | ||||| | |||||||||| ||| || || | | || | ||| | ||| || Sbjct 1783 AACTGGTTTAATGTTTGTTCCCTTTCGTCGTT-ACCGCCACCAAGACCGATGCCGCGATG 1841 Query 9694 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 9753 | | || || ||||| || || || ||||| | || || || ||||| | | Sbjct 1842 CCTACCTACTGCATCTATTTCGTCTATGAAAATTATACAAGGAGCATTTTTCTTACCTTG 1901 Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 ||||| | |||||| ||||| | || || ||||| |||||||| || || || | | Sbjct 1902 ATCAAACATATCCCGGACACGGCTTGCACCAACACCGACAAACATTTCAACGAAATCAGA 1961 Query 9814 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873 | ||| | || || ||||||| |||||| ||||| || || || || ||||| Sbjct 1962 TCCAGAAATACTAAAAAACGGTACATTAGCTTCACCTGCAATTGCACGAGCAAGTAGAGT 2021 Query 9874 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGC----CAC 9929 ||||| || || || ||| | ||| ||| ||| ||||| | | ||| Sbjct 2022 TTTACCAGTTCCAGGGGAACCAATTAAAAGGCATCCTTTTGGTATCTTCCCACCTAACAC 2081 Query 9930 TTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGG 9989 || || | | || ||| ||||||||||| |||||||| |||| || ||||| | Sbjct 2082 TTGAAATTTTTGCCT----TTGTTTAAGAAAATCAACAATTTCAACCAACTCTTCTTTTG 2137 Query 9990 CGGCGTCAATCCCCTCAACATC 10011 | | |||||||| ||||||| Sbjct 2138 CTTCATCAATCCCAGCAACATC 2159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583249871150760