Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq422 165 2e-35
seq1121 93.3 1e-13
>seq422
Length=7389
Score = 165 bits (182), Expect = 2e-35
Identities = 412/617 (67%), Gaps = 34/617 (6%)
Strand=Plus/Plus
Query 350147 TTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCT 350206
|||||||| || ||| | ||||||| | ||||||||||| ||||||||||||||||
Sbjct 5510 TTAAAAGAAGCTAAATTAAGCAAAAATGAAATTGATGAAGTTATTTTAGTTGGTGGTTCA 5569
Query 350207 ACACGTATTCCAAAAGTTCAACA-GTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTC 350265
||| | || ||| || ||| | |||| || | || || ||||||||
Sbjct 5570 ACAAGAATCCCAGCTGTGCAAGAAGTTATTAAAAACGAAATT----GGTAAAGAACCACA 5625
Query 350266 TAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTT 350325
| | |||| || ||||||| || || | ||||||||| |||| | | | ||
Sbjct 5626 TCGTGGTGTTAACCCTGATGAAGTAGTAGCTTTGGGTGCTGCTATTCAAGGAGGAGTATT 5685
Query 350326 ATCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTC 350385
||| || || ||| | ||| | | |||||| ||||||||||||| | ||
Sbjct 5686 ATCGGGTGAT----GTT-----ACTGACGTT---TTACTATTAGATGTAACTCCTTTATC 5733
Query 350386 GCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTC-CTAGAAATAGTACTG 350444
| || | ||||||| || | ||||||||| | ||| || || | |||| |||||
Sbjct 5734 ATTAGGTATTGAAACTTTAGGAGGAGTAATGAC-GCCATTAATCTCTCGTAATACTACTG 5792
Query 350445 TACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAA 350504
| ||||| |||||||| ||| |||||| || || ||| ||||| || || || |
Sbjct 5793 TTCCTACTAAAAAGTCACAAGTTTTTTCAACTGCTGAAGACAATCAACCCGCTGTTGATA 5852
Query 350505 TTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTA 350564
|| || || |||| |||||| | | ||||||||||| || ||| || ||
Sbjct 5853 TTAGTGTTTTACAAGGAGAACGTCCACTAGCTAAAGATAATCATTCACTGGGTCGTTTCC 5912
Query 350565 CCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATA 350624
|||||| || |||| || ||||| ||||| || |||||||| |||| ||||
Sbjct 5913 AATTAAGTGGTATCGAACCAGCACCAAGAGGTGTTCCACAAATTGAAGTTACTTTTGATA 5972
Query 350625 TTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAAATCAAGTGGTAAAAGTAGTA 350684
| ||| ||||||||| || ||||| || ||| ||| | |||| || ||
Sbjct 5973 TCGATGTTAATGGTATTGTATCTGTTAGTGC----TAAAGATCTA-----AAAACTAATA 6023
Query 350685 AGG---TAGAAATTACTAATGATAAATCTAG-ACTTTCA--AAAGAAGATATTGAGAAAA 350738
| | | ||||||||| | || | | ||||| | ||||| || ||||| ||||
Sbjct 6024 AAGAACAAAAAATTACTATTAGCAATAGTGGTACTTTAAGTAAAGACGAAATTGAAAAAA 6083
Query 350739 TGACACAAGATGCCGAA 350755
|| ||||||||| |||
Sbjct 6084 TGGTACAAGATGCTGAA 6100
Score = 150 bits (166), Expect = 5e-31
Identities = 222/314 (71%), Gaps = 3/314 (1%)
Strand=Plus/Plus
Query 349575 TTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATT 349634
|||||||| || | |||||| ||| | || | | || ||||||||||| || || || |
Sbjct 4929 TTGCTGAATCAAAATTAGGTAAAAAAATATCAAAAGCAGTTATTACTGTTCCTGCTTACT 4988
Query 349635 TTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTC 349694
|||| ||| || ||| || || ||| |||| || | ||||| || ||||| ||
Sbjct 4989 TTAACAATGAACAACGTGAAGCTACTAAAAATGCAGGAATTATTGCAGGATTAAAAGTAG 5048
Query 349695 TAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTG 349754
|||||| ||||| ||||| |||||||| || || || ||||| | || ||| |
Sbjct 5049 AAAGAATTATTAACGAACCAACTGCTGCTGCCATCGCTTATGGTTTAGACAAA---CAAG 5105
Query 349755 ACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTAC 349814
| |||| | || ||| | | ||||| ||||||||||| || ||||| || ||| | |
Sbjct 5106 ATAAAGATCACAAAATTTTAGTATTTGACTTAGGTGGTGGAACATTTGACGTTTCAGTTC 5165
Query 349815 TAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTG 349874
|| | | | || |||| |||||||| | ||||| |||||||| | |||||||
Sbjct 5166 TAGAATTAGCAGGTGGAACATTTGAAGTATTATCAACTAGTGGTGATAACAAACTTGGTG 5225
Query 349875 GAGAAGATTTTGAT 349888
| || || ||||||
Sbjct 5226 GTGACGACTTTGAT 5239
Score = 147 bits (162), Expect = 7e-30
Identities = 445/680 (65%), Gaps = 42/680 (6%)
Strand=Plus/Minus
Query 182782 CTTTAAATTCCTCATCTTCTTTAGCATACTTTTCAGCATCCATTGT--CATTCTTTCTAT 182839
||||| || ||||| | || | || |||||||||||| |||| |||| |||| ||
Sbjct 6131 CTTTATGTTTTTCATCGTTTTCACGATTCTTTTCAGCATC--TTGTACCATTTTTTCAAT 6074
Query 182840 TTCATCTTTAGAAAGATGACCTGCATCATTTGTAATTACTACATTACTAGTTACTCCAGT 182899
||| |||||| | | ||| | ||| |||| | || ||| | ||| || | |
Sbjct 6073 TTCGTCTTTACTTAAAGTACC---ACTATTGCTAAT-AGTA-ATTTTTTGTT-CTTTATT 6020
Query 182900 TGATTTTTCAAGT---GCGCTAACATTTAAAATACCATTAGAGTCAACATCAAATGATAC 182956
| |||| | | || |||||| || |||||||||| || | |||||| | ||
Sbjct 6019 AGTTTTTAGATCTTTAGCACTAACAGATACAATACCATTAACATCGATATCAAAAGTAAC 5960
Query 182957 TTCAATCTGTGGAACACCTCGTGGCATTGGTGGAATTCCAGTTAAAGTAAATTCACCTAA 183016
|||||| ||||||||||||| ||| |||| || ||| |||| || ||| |
Sbjct 5959 TTCAATTTGTGGAACACCTCTTGGTGCTGGTTCGATACCACTTAATTGGAAACGACCCAG 5900
Query 183017 TTTATTATTATCTTTAGTTCTTGCTCTCTCGCCTTCATATACTTGAATAGTAACTGCTGG 183076
| || ||||||||||| | || | || |||| | || |||| ||| || ||
Sbjct 5899 TGAATGATTATCTTTAGCTAGTGGACGTTCTCCTTGTAAAACACTAATATCAACAGCGGG 5840
Query 183077 CTGATTATCACTATAAGTAGAAAAAACTTGCTTTTTATTAATAGGAATAGTTGAATTTCG 183136
||||| || | ||| ||||||||||| || ||| |||||| ||| | ||| ||
Sbjct 5839 TTGATTGTCTTCAGCAGTTGAAAAAACTTGTGACTTTTTAGTAGGAACAGTAGTATTACG 5780
Query 183137 CG-GAACAATTACAGTCATTACTTCTCTGGCAGTTTCTAATCCTAATGATAATGGTGCTA 183195
| || ||| | ||||||||| ||| |||||| | ||||||||||| || | ||
Sbjct 5779 AGAGATTAATGGC-GTCATTACTCCTCCTAAAGTTTCAATACCTAATGATAAAGGAGTTA 5721
Query 183196 CATCTAGTAATAATAAATCTGATGTTTTATCTGATTTAATATCAC---TTAAAATTGCAG 183252
|||||| || ||| | || | ||| ||||| ||| | | |
Sbjct 5720 CATCTAATAGTAAAACGTCAG---------------TAACATCACCCGATAATACTCCTC 5676
Query 183253 CTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATTCTT 183312
|||||| ||| ||||| | || || ||||||| ||||||| |||| | |||||
Sbjct 5675 CTTGAATAGCAGCACCCAAAGCTACTACTTCATCAGGGTTAACACCACGATGTGGTTCTT 5616
Query 183313 TGCCATTAAAAAATTC---TGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369
| || || ||| | || | || ||| | ||| ||||| ||||||||||
Sbjct 5615 TACC------AATTTCGTTTTTAATAACTTCTTGCACAGCTGGGATTCTTGTTGAACCAC 5562
Query 183370 CGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTT 183429
| ||||| | |||||||| || | | |||| || | || | ||||||||| | |
Sbjct 5561 CAACTAAAATAACTTCATCAATTTCATTTTTGCTTAATTTAGCTTCTTTTAAAGCATCAC 5502
Query 183430 CAACAGGGTCCATAGTTTTT 183449
|||||| | |||||| ||
Sbjct 5501 GAACAGGAGCAATAGTTCTT 5482
>seq1121
Length=1158
Score = 93.3 bits (102), Expect = 1e-13
Identities = 180/260 (69%), Gaps = 7/260 (3%)
Strand=Plus/Plus
Query 390977 TTCAAGAAGACTAGTTATGTCAGCCTGGAATCCTAGTCAACTAGGAGAAATGGCATTACC 391036
|||| |||||| || | |||| || |||||| || | | | |||||| ||||
Sbjct 893 TTCACGAAGACACATTTTATCAGTATGAAATCCTGCAGAAATTAAAAATATGGCACTACC 952
Query 391037 TCCGTGCCATATTTTAGCTCAATTTAATGTTGTAAAAGATGAAC---TTTCTTGTTCATT 391093
|| || |||| |||| ||||||| | ||| | ||| || | |||||| |||
Sbjct 953 ACCATGTCATACTTTAATTCAATTTTACGTTTCTGATGATAAAAAATTATCTTGTCAATT 1012
Query 391094 ATATCAGAGAAGTGGAGATGTAGGTTTAGGAGTTCCATTTAATATTGCATCTTATAGTAT 391153
|||||| | |||| |||| | |||||||||||| ||||||||||| |||||| | ||
Sbjct 1013 ATATCAACGTAGTGCAGATATTTTTTTAGGAGTTCCTTTTAATATTGCTTCTTAT-GCAT 1071
Query 391154 T-TTAACTCATATAATAGCAAAACATTGTAACTTAAAAGCTA-AAGAATTTGTATATTAT 391211
| ||||| || ||||| || ||| | || ||||| ||||||| | || |
Sbjct 1072 TATTAACAATAATGTTAGCACAAATATGTGGC-TATCAGCTAGGAGAATTTATTCATACT 1130
Query 391212 TTAGGAAATACCCATATTTA 391231
||||| || | ||||||||
Sbjct 1131 TTAGGTGATGCTCATATTTA 1150
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515225298118697
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |