Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq422 165 2e-35 seq1121 93.3 1e-13 >seq422 Length=7389 Score = 165 bits (182), Expect = 2e-35 Identities = 412/617 (67%), Gaps = 34/617 (6%) Strand=Plus/Plus Query 350147 TTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCT 350206 |||||||| || ||| | ||||||| | ||||||||||| |||||||||||||||| Sbjct 5510 TTAAAAGAAGCTAAATTAAGCAAAAATGAAATTGATGAAGTTATTTTAGTTGGTGGTTCA 5569 Query 350207 ACACGTATTCCAAAAGTTCAACA-GTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTC 350265 ||| | || ||| || ||| | |||| || | || || |||||||| Sbjct 5570 ACAAGAATCCCAGCTGTGCAAGAAGTTATTAAAAACGAAATT----GGTAAAGAACCACA 5625 Query 350266 TAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTT 350325 | | |||| || ||||||| || || | ||||||||| |||| | | | || Sbjct 5626 TCGTGGTGTTAACCCTGATGAAGTAGTAGCTTTGGGTGCTGCTATTCAAGGAGGAGTATT 5685 Query 350326 ATCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTC 350385 ||| || || ||| | ||| | | |||||| ||||||||||||| | || Sbjct 5686 ATCGGGTGAT----GTT-----ACTGACGTT---TTACTATTAGATGTAACTCCTTTATC 5733 Query 350386 GCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTC-CTAGAAATAGTACTG 350444 | || | ||||||| || | ||||||||| | ||| || || | |||| ||||| Sbjct 5734 ATTAGGTATTGAAACTTTAGGAGGAGTAATGAC-GCCATTAATCTCTCGTAATACTACTG 5792 Query 350445 TACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAA 350504 | ||||| |||||||| ||| |||||| || || ||| ||||| || || || | Sbjct 5793 TTCCTACTAAAAAGTCACAAGTTTTTTCAACTGCTGAAGACAATCAACCCGCTGTTGATA 5852 Query 350505 TTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTA 350564 || || || |||| |||||| | | ||||||||||| || ||| || || Sbjct 5853 TTAGTGTTTTACAAGGAGAACGTCCACTAGCTAAAGATAATCATTCACTGGGTCGTTTCC 5912 Query 350565 CCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATA 350624 |||||| || |||| || ||||| ||||| || |||||||| |||| |||| Sbjct 5913 AATTAAGTGGTATCGAACCAGCACCAAGAGGTGTTCCACAAATTGAAGTTACTTTTGATA 5972 Query 350625 TTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAAATCAAGTGGTAAAAGTAGTA 350684 | ||| ||||||||| || ||||| || ||| ||| | |||| || || Sbjct 5973 TCGATGTTAATGGTATTGTATCTGTTAGTGC----TAAAGATCTA-----AAAACTAATA 6023 Query 350685 AGG---TAGAAATTACTAATGATAAATCTAG-ACTTTCA--AAAGAAGATATTGAGAAAA 350738 | | | ||||||||| | || | | ||||| | ||||| || ||||| |||| Sbjct 6024 AAGAACAAAAAATTACTATTAGCAATAGTGGTACTTTAAGTAAAGACGAAATTGAAAAAA 6083 Query 350739 TGACACAAGATGCCGAA 350755 || ||||||||| ||| Sbjct 6084 TGGTACAAGATGCTGAA 6100 Score = 150 bits (166), Expect = 5e-31 Identities = 222/314 (71%), Gaps = 3/314 (1%) Strand=Plus/Plus Query 349575 TTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATT 349634 |||||||| || | |||||| ||| | || | | || ||||||||||| || || || | Sbjct 4929 TTGCTGAATCAAAATTAGGTAAAAAAATATCAAAAGCAGTTATTACTGTTCCTGCTTACT 4988 Query 349635 TTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTC 349694 |||| ||| || ||| || || ||| |||| || | ||||| || ||||| || Sbjct 4989 TTAACAATGAACAACGTGAAGCTACTAAAAATGCAGGAATTATTGCAGGATTAAAAGTAG 5048 Query 349695 TAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTG 349754 |||||| ||||| ||||| |||||||| || || || ||||| | || ||| | Sbjct 5049 AAAGAATTATTAACGAACCAACTGCTGCTGCCATCGCTTATGGTTTAGACAAA---CAAG 5105 Query 349755 ACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTAC 349814 | |||| | || ||| | | ||||| ||||||||||| || ||||| || ||| | | Sbjct 5106 ATAAAGATCACAAAATTTTAGTATTTGACTTAGGTGGTGGAACATTTGACGTTTCAGTTC 5165 Query 349815 TAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTG 349874 || | | | || |||| |||||||| | ||||| |||||||| | ||||||| Sbjct 5166 TAGAATTAGCAGGTGGAACATTTGAAGTATTATCAACTAGTGGTGATAACAAACTTGGTG 5225 Query 349875 GAGAAGATTTTGAT 349888 | || || |||||| Sbjct 5226 GTGACGACTTTGAT 5239 Score = 147 bits (162), Expect = 7e-30 Identities = 445/680 (65%), Gaps = 42/680 (6%) Strand=Plus/Minus Query 182782 CTTTAAATTCCTCATCTTCTTTAGCATACTTTTCAGCATCCATTGT--CATTCTTTCTAT 182839 ||||| || ||||| | || | || |||||||||||| |||| |||| |||| || Sbjct 6131 CTTTATGTTTTTCATCGTTTTCACGATTCTTTTCAGCATC--TTGTACCATTTTTTCAAT 6074 Query 182840 TTCATCTTTAGAAAGATGACCTGCATCATTTGTAATTACTACATTACTAGTTACTCCAGT 182899 ||| |||||| | | ||| | ||| |||| | || ||| | ||| || | | Sbjct 6073 TTCGTCTTTACTTAAAGTACC---ACTATTGCTAAT-AGTA-ATTTTTTGTT-CTTTATT 6020 Query 182900 TGATTTTTCAAGT---GCGCTAACATTTAAAATACCATTAGAGTCAACATCAAATGATAC 182956 | |||| | | || |||||| || |||||||||| || | |||||| | || Sbjct 6019 AGTTTTTAGATCTTTAGCACTAACAGATACAATACCATTAACATCGATATCAAAAGTAAC 5960 Query 182957 TTCAATCTGTGGAACACCTCGTGGCATTGGTGGAATTCCAGTTAAAGTAAATTCACCTAA 183016 |||||| ||||||||||||| ||| |||| || ||| |||| || ||| | Sbjct 5959 TTCAATTTGTGGAACACCTCTTGGTGCTGGTTCGATACCACTTAATTGGAAACGACCCAG 5900 Query 183017 TTTATTATTATCTTTAGTTCTTGCTCTCTCGCCTTCATATACTTGAATAGTAACTGCTGG 183076 | || ||||||||||| | || | || |||| | || |||| ||| || || Sbjct 5899 TGAATGATTATCTTTAGCTAGTGGACGTTCTCCTTGTAAAACACTAATATCAACAGCGGG 5840 Query 183077 CTGATTATCACTATAAGTAGAAAAAACTTGCTTTTTATTAATAGGAATAGTTGAATTTCG 183136 ||||| || | ||| ||||||||||| || ||| |||||| ||| | ||| || Sbjct 5839 TTGATTGTCTTCAGCAGTTGAAAAAACTTGTGACTTTTTAGTAGGAACAGTAGTATTACG 5780 Query 183137 CG-GAACAATTACAGTCATTACTTCTCTGGCAGTTTCTAATCCTAATGATAATGGTGCTA 183195 | || ||| | ||||||||| ||| |||||| | ||||||||||| || | || Sbjct 5779 AGAGATTAATGGC-GTCATTACTCCTCCTAAAGTTTCAATACCTAATGATAAAGGAGTTA 5721 Query 183196 CATCTAGTAATAATAAATCTGATGTTTTATCTGATTTAATATCAC---TTAAAATTGCAG 183252 |||||| || ||| | || | ||| ||||| ||| | | | Sbjct 5720 CATCTAATAGTAAAACGTCAG---------------TAACATCACCCGATAATACTCCTC 5676 Query 183253 CTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATTCTT 183312 |||||| ||| ||||| | || || ||||||| ||||||| |||| | ||||| Sbjct 5675 CTTGAATAGCAGCACCCAAAGCTACTACTTCATCAGGGTTAACACCACGATGTGGTTCTT 5616 Query 183313 TGCCATTAAAAAATTC---TGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 | || || ||| | || | || ||| | ||| ||||| |||||||||| Sbjct 5615 TACC------AATTTCGTTTTTAATAACTTCTTGCACAGCTGGGATTCTTGTTGAACCAC 5562 Query 183370 CGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTT 183429 | ||||| | |||||||| || | | |||| || | || | ||||||||| | | Sbjct 5561 CAACTAAAATAACTTCATCAATTTCATTTTTGCTTAATTTAGCTTCTTTTAAAGCATCAC 5502 Query 183430 CAACAGGGTCCATAGTTTTT 183449 |||||| | |||||| || Sbjct 5501 GAACAGGAGCAATAGTTCTT 5482 >seq1121 Length=1158 Score = 93.3 bits (102), Expect = 1e-13 Identities = 180/260 (69%), Gaps = 7/260 (3%) Strand=Plus/Plus Query 390977 TTCAAGAAGACTAGTTATGTCAGCCTGGAATCCTAGTCAACTAGGAGAAATGGCATTACC 391036 |||| |||||| || | |||| || |||||| || | | | |||||| |||| Sbjct 893 TTCACGAAGACACATTTTATCAGTATGAAATCCTGCAGAAATTAAAAATATGGCACTACC 952 Query 391037 TCCGTGCCATATTTTAGCTCAATTTAATGTTGTAAAAGATGAAC---TTTCTTGTTCATT 391093 || || |||| |||| ||||||| | ||| | ||| || | |||||| ||| Sbjct 953 ACCATGTCATACTTTAATTCAATTTTACGTTTCTGATGATAAAAAATTATCTTGTCAATT 1012 Query 391094 ATATCAGAGAAGTGGAGATGTAGGTTTAGGAGTTCCATTTAATATTGCATCTTATAGTAT 391153 |||||| | |||| |||| | |||||||||||| ||||||||||| |||||| | || Sbjct 1013 ATATCAACGTAGTGCAGATATTTTTTTAGGAGTTCCTTTTAATATTGCTTCTTAT-GCAT 1071 Query 391154 T-TTAACTCATATAATAGCAAAACATTGTAACTTAAAAGCTA-AAGAATTTGTATATTAT 391211 | ||||| || ||||| || ||| | || ||||| ||||||| | || | Sbjct 1072 TATTAACAATAATGTTAGCACAAATATGTGGC-TATCAGCTAGGAGAATTTATTCATACT 1130 Query 391212 TTAGGAAATACCCATATTTA 391231 ||||| || | |||||||| Sbjct 1131 TTAGGTGATGCTCATATTTA 1150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515225298118697