Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq1494 228 3e-55 >seq1494 Length=1074632 Score = 228 bits (252), Expect = 3e-55 Identities = 645/982 (66%), Gaps = 48/982 (5%) Strand=Plus/Plus Query 39706 ACGCCAGCGGTATGCTTCACACTGGTTGCAACCTTGTCCCAGTTGGCTCCGGTGGACAGA 39765 ||||| ||||| | ||| | ||||| ||||||||||||||||| | ||||| || ||| Sbjct 584755 ACGCCGGCGGTGTTCTTGATGCTGGTCGCAACCTTGTCCCAGTTCGAGCCGGTCGAGAGA 584814 Query 39766 GCGGCATCATCCGGGGATGCCCCACCATTAGCTACATCCCAGGCATACCCGCGCAGCCCT 39825 ||| | || || || || || || | ||||||| || || | | Sbjct 584815 TCGGAGTTGGTGGGCGACTTGCCGCCGTTGCCTTCGTCCCAGGTGTAGCCCTTGATCGAG 584874 Query 39826 ACGCCGAAGCTGTAGTCGATCTGCAGAGTGGTCTCGATGCGCTCTTTGCCGTTGCTGGTC 39885 | |||||| ||||||| | |||||| |||||||||||||| | |||||||| ||||| Sbjct 584875 AGACCGAAGGTGTAGTCCACCTGCAGCGTGGTCTCGATGCGGTTCTTGCCGTTCGTGGTC 584934 Query 39886 TCGATGTTCGAGATCAGGTCTCGGGCATCGTGGACAGTTGCGGCGCCTTGGGTCAGCGAG 39945 |||| ||| ||||||| ||| | | | || || ||||| ||||| | | ||||||| Sbjct 584935 TCGACGTTGGAGATCACGTCACCGCCGTCAAACACCGTTGCCGCGCCCTCCGCCAGCGAG 584994 Query 39946 AGTACGCGACGCTTGGCAGGAGCAGCCGGATCGGTCACTGCTGGGGTGTAG------AGC 39999 || || ||| | | || | || || | | ||||||| || Sbjct 584995 AGAAC------CTTCTC----GTAG--GTATTGGGC------GAGGTGTAGGACGAAAGT 585036 Query 40000 GCCGGGGCATCGGTCACCACGATCAAGCGACCGAGGATATCCACCACGCGCACGCCGTTG 40059 ||||| |||||||| || || | |||||||||||||| | | || | | Sbjct 585037 GCCGGCGCATCGGTGACAACCACGGCCTTTCCGAGGATATCCACGATGTTGACCGTGCCG 585096 Query 40060 GATTGGAACAGTTGCTGAGCGTTGGTCAGATTCTGGCCAATGAAGGTGTGGAACTGGGCA 40119 | |||||| ||||| |||||||||| |||| || || | | ||| | || | Sbjct 585097 GCCGTGAACAGGCGCTGATCGTTGGTCAGGTTCTTACCGATCAGGCGGTGATAGGTGGAA 585156 Query 40120 CCATCCATAACTTGCGCGATGAG-CTGGCTAGAGTGGTCGCCGAACAGCGCGTGGCTATC 40178 || ||| || || || | ||| || || || || |||||| ||||| | Sbjct 585157 CCGGACATGACCTGAGCAACGAGGCTTGCC-GACGCATCACCGAACTTGGCGTGCGCGCC 585215 Query 40179 GTTGACCGCAATGTAGTCCACTTTCTT---------GGCATCGGACACGTCGACAGTGGT 40229 ||||| ||| |||| ||| || |||| | |||||||| | | | Sbjct 585216 GTTGATCGCGCCGTAGGTCACGGTCGGATCGGGAGAGGCACCCGACACGTC---ATTCTT 585272 Query 40230 AGCGGCGCCTTGGTTGCTGATGGCGGCTACCAGGGCGGCAACGGCTGTGTTCAACTGATC 40289 |||| | |||||| || || | ||||| ||| | || || || | |||||| Sbjct 585273 CGCGGTGGACTGGTTGGAAATCGCCGTGACCAGAGCGAGGATTGCCGTATTGAGCTGATC 585332 Query 40290 CTGCAGAAGAGACTCGGCGAAGTAGCGGGAGGCGACTTCGACACCTTCAGCAGTCGGCTT 40349 ||| | | ||| || |||| |||||| || |||||||| || | ||| ||||| Sbjct 585333 GGCCAGCATCGCCTCCGCAAAGTTGCGGGAAGCCACTTCGACGCCCTGAGCGGTCGGGCG 585392 Query 40350 GCGCAGCCAGGTCATTTGGGATGGTTCGTATCGAACCGGGCCGAAGCCACCAGCCACCTT 40409 ||||||||||||| ||| || ||||| || | ||| |||||||| || || | ||| Sbjct 585393 CTGCAGCCAGGTCATCTGGCTAGGCTCGTAACGGATCGGACCGAAGCCGCCCGCGATCTT 585452 Query 40410 GACGGTATTGTGCTTCAGCTGGGTCAGATCAACCGGAGTTACTGCGTC--ATTCGAGCCG 40467 || | |||||| || | |||||| || ||| | | |||| ||| | || Sbjct 585453 CACCGCGGAGTGCTTGAGTTCGGTCAGGTCGGTCGGGGCCGC--CGTCGAATTGGCCGCG 585510 Query 40468 TAGCGGTTCACGCGACGGCGAGCCCC-TGCCAGGCCTGCATAGAAACTGGTT--TGCAGG 40524 || || | ||||| || | ||| || ||||| | |||| | || || | | Sbjct 585511 TAACGATCAACGCGGCGCTGTGCCGAGTGGATCGCCTGAA-AGAAC--GATTCCTGGAAG 585567 Query 40525 AAGTCGCCGTCGAAGCCGTCAGTGGTCAGAAGGATCGCGCCACCGGACGCCGCATTGAAT 40584 || ||||| |||||||| | ||||||||| ||||||| || |||||||| ||||| Sbjct 585568 AAATCGCCATCGAAGCCCTGCGTGGTCAGACGGATCGCTCCGTTCGACGCCGCGTTGAAC 585627 Query 40585 CGCTCAACCATCTGGCTCAGCGTCTCGACGGTGGCCGGCATGAAATAGGTGTTGAACACC 40644 || ||||||||| ||||||||||| ||| |||||||||| || ||||||| ||| Sbjct 585628 TTCTGAACCATCTGCGCCAGCGTCTCGATGGTCGCCGGCATGATGTACTTGTTGAAGACC 585687 Query 40645 TCCATATCGGAAAGTGCCATGG 40666 | ||| | || || | ||||| Sbjct 585688 TGCATCTGAGAGAGAGACATGG 585709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194815732096478