Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq845 120 1e-22 seq713 100 1e-16 >seq845 Length=164897 Score = 120 bits (132), Expect = 1e-22 Identities = 256/380 (67%), Gaps = 2/380 (1%) Strand=Plus/Minus Query 5820 GTACGACCTGACCGTCTCCACCGGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCATCCA 5879 || ||| |||||| || | ||| || || || || || ||||| || ||||| Sbjct 111587 GTGCGAGCTGACCTTCGGCGTCGGGCCTGCGGGCACCGGCAAGACGTTTCTGGCGGCGGC 111528 Query 5880 CCACGGCCTGCGCCTGCTGGAGGCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGC 5939 | | ||| ||||||| | ||| || | | || || ||||||||||| || || Sbjct 111527 CTATGGCGCATCCCTGCTGCGGCGCGGACAGGTGGACCGGCTGGTCATCACCCGCCCGGC 111468 Query 5940 CGTTGAGGCAGATGAGAAGCTCGGCTTCCTGCCCGGCACTGTGGACGAGAAGATGGCACC 5999 |||||||| | |||||||| ||||||||||||||| || |||||||| | | || Sbjct 111467 GGTTGAGGCGGGCGAGAAGCTGGGCTTCCTGCCCGGCGACCTGAACGAGAAGGTCGACCC 111408 Query 6000 CTACCTCACCCCGATGCTGGACGCGGTGATCGACCTGGTCGGC-CCGACGATGACGAAGC 6058 ||| || ||||||| ||| ||| ||| ||| | | ||| |||| || | | ||| Sbjct 111407 CTATCTGGCCCCGATCTGGGAGGCGCTGAACGATATTCTGGGCGCCGAGGACG-TGCAGC 111349 Query 6059 GCCTCCTCGAGTCGCGCCAGCTGGAGGTCGCCCCGCTGGCCTACATGCGAGGCCGGACGT 6118 ||| | ||| | || || | || | |||||| | |||| |||||| ||||| || Sbjct 111348 GCCGACGCGACAAGGGCGAGATCGAAGCCGCCCCCATCGCCTTCATGCGCGGCCGCACCC 111289 Query 6119 TCAACGACACGTACATCGTCGCTGACGAGATGCAGAACGCCACCCCGCGCCAGACCGCGC 6178 | | | || | | | || ||| |||||| |||||| || | | | |||| | Sbjct 111288 TGAGCCACGCCTTCGTCATCGTGGACGAGGCCCAGAACACCTCGCGTCTGCAGATGAAGA 111229 Query 6179 TGCTGGTGACCCGCCTGGGC 6198 || || ||||||| |||||| Sbjct 111228 TGGTGCTGACCCGTCTGGGC 111209 >seq713 Length=1192841 Score = 100 bits (110), Expect = 1e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 32328 CCCATATTCCGCCTGTTCGGCTACGCCGGAACTGGCAAGACCACGCTGGCCCGGCACATC 32387 ||| | ||||||||||||||||||||||| || ||||||||||| ||||| || || ||| Sbjct 113732 CCCGTGTTCCGCCTGTTCGGCTACGCCGGCACCGGCAAGACCACACTGGCGCGACATATC 113673 Query 32388 GCCGAGGGCATCGACGGCACCGTTCTCTTCGCCGCCCCGACCGGGAAGGCCGC 32440 || || ||| |||||||| || ||||||||| ||||| ||||| || Sbjct 113672 GCGGACGGCGTCGACGGCGAAGTGAAATTCGCCGCCTTCACCGGAAAGGCGGC 113620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191484591393920