Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq316 179 1e-40 seq998 176 1e-39 seq827 170 6e-38 seq811 161 3e-35 >seq316 Length=8699 Score = 179 bits (198), Expect = 1e-40 Identities = 288/406 (71%), Gaps = 16/406 (4%) Strand=Plus/Minus Query 40009 CTTGGTCAGCTTCTCGCCGACCTGGA---AGGGCTTGTCCAGCACGCGGGCCGCGTCCTT 40065 |||||||||||| ||| ||||| | ||| | | || ||| ||| | |||| Sbjct 4516 CTTGGTCAGCTTGTCG---ACCTGCCCATACGGCATCTGCAACACCCGGCCGACGTCGCG 4460 Query 40066 CATCGCGTTGCGCGCCTTGATCCGGCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCC 40125 || | || |||||||| | | |||||||| |||||| ||||| | |||| || Sbjct 4459 CAGCACGCCGCGCGCCTGCAACGTTCCGAAGGTGATGATCTGGGCGACGTGATCGGTGCC 4400 Query 40126 GTACTTCTCGGTG-ACGTACCGGATGACCTCGCCGCGACGCCGGTCATC---GAAGTCGA 40181 ||| || || ||||| ||| |||||||| ||||||||| | |||||||| Sbjct 4399 GTAGCGG-CGCTGCACGTAGTCGATTACCTCGCC---ACGCCGGTCCTGACAGAAGTCGA 4344 Query 40182 TGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40241 |||| | ||||||||| |||||||| ||||| || ||||| |||||||| | || ||| Sbjct 4343 TGTCGAAGTCGGGCATCGACACGCGTTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGA 4284 Query 40242 GCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCG 40301 | ||||||||||||||||| ||| | || || |||||||||||||| | | Sbjct 4283 AACGGATCGGATCGAGGTCGGTGATGGTGAGCGAATATGCCACCAGCGAACCGGCACCGG 4224 Query 40302 AGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGA 40361 |||| ||||| || || || | ||| | | |||||||||| ||||||||||| | Sbjct 4223 AGCCGCGCCCCGGCCCCACAGGAATGCCCTGCGCCTTGGCCCACTTGATGAAGTCGGACA 4164 Query 40362 CGACCAGGAAGTAGGACGGGA-AGCCCATCTGGATGATCATGTCGA 40406 ||| ||||||||| | ||| | | |||| || |||| | ||||| Sbjct 4163 CGATCAGGAAGTA-GCCGGAATATTTCATCCGGGTGATGACGTCGA 4119 Score = 80.6 bits (88), Expect = 9e-11 Identities = 91/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39231 TCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGA 39290 ||||||||||||| || || |||||||||||||| | ||| || ||||| || | || Sbjct 5249 TCTTCTTGCCCATCGCGCGGCGCAGCAGGTCGGCGTCGCCGAGCGAATAGCCGGCCATGA 5190 Query 39291 TCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGTACGTCGGGTCCAGGA 39350 |||||| || | |||||| ||||| |||||||||| ||| | || | ||||| Sbjct 5189 CCTGCGCGATCTGCATCACCTGTTCCTGATAGATGATGACGCCGAAGGTTTCCTTCAGGA 5130 Query 39351 TC 39352 || Sbjct 5129 TC 5128 >seq998 Length=1052685 Score = 176 bits (194), Expect = 1e-39 Identities = 266/372 (72%), Gaps = 10/372 (3%) Strand=Plus/Minus Query 40009 CTTGGTCAGCTTCTCGCC--GACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTC 40066 |||||| ||||| ||| | |||| | ||| | | || ||||||| | |||| | Sbjct 531843 CTTGGTGAGCTTGTCGACCTGACCATAA--GGCATCTGCAACACGCGGCCAACGTCGCGC 531786 Query 40067 ATCGCGTTGCGCGCCTTGATCCGGCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCG 40126 | | || |||||||| | ||||||||| |||||| |||||| ||| || Sbjct 531785 AGCACGCCGCGCGCCTGCAGGGTGCCGAAGGTGATGATCTGACCGACCTGATCGCGGCCA 531726 Query 40127 TACTTCTCGGTGACGTACCGGATGACCTCGCCGCGACG--CCGGTCATCGAAGTCGATGT 40184 || ||| ||||| |||| ||||||||||| || || | || ||||||||||| Sbjct 531725 TAGCGCTCCTGCACGTAATGGATCACCTCGCCGCGGCGATCCTGACA--GAAGTCGATGT 531668 Query 40185 CAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCT 40244 | | ||| ||||| |||||||||||||| || || || || ||||| | || ||| Sbjct 531667 CGAAGTCCGGCATCGACACGCGCTCGGGATTGAGAAAGCGTTCGAACAGCAGGCCGAAGC 531608 Query 40245 CCAGTGGATCGAGGTCGGTGATCCCGAG-GCAGTAGGCGACCAGCGAACCGGCTGCCGAG 40303 ||| ||||||||||||||||| || ||| ||||| |||||||| || || | ||| Sbjct 531607 GCAGCGGATCGAGGTCGGTGATGGTCAGCGCA-TAGGCCACCAGCGAGCCCGCGCCGGAG 531549 Query 40304 CCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACG 40363 || ||||| || |||||| | ||| | | |||| ||||| ||||||||||| ||| Sbjct 531548 CCGCGCCCCGGCCCGACCGGAATGCCCTGCGCCTTCGCCCACTTGATGAAGTCGGACACG 531489 Query 40364 ACCAGGAAGTAG 40375 | |||||||||| Sbjct 531488 ATCAGGAAGTAG 531477 >seq827 Length=173386 Score = 170 bits (188), Expect = 6e-38 Identities = 260/368 (71%), Gaps = 7/368 (2%) Strand=Plus/Minus Query 40037 GGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGGCCGAAG 40096 ||| | | ||||||||| || |||| || | | ||||||| | ||||||| Sbjct 46064 GGCATCTGCAGCACGCGCCCCACGTCGCGCAGCACAGCCCGCGCCTGCAGGGTGCCGAAG 46005 Query 40097 GTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATGACCTCG 40156 || |||||| |||||| ||| ||||| | | || || ||| ||||| Sbjct 46004 GTGATGATCTGCGCGACCCGGTCCTTGCCGTAGTGGGCCTGCACATAGTCGATCACCTCT 45945 Query 40157 CCGCGACGC--CGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGT 40214 | || ||| | | || |||||||||||| | |||||||||||| || || || |||| Sbjct 45944 TCCCGCCGCTCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATGGAGACCCGTTCCGGGT 45887 Query 40215 TCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGC 40274 ||||||| |||||||| | || ||| | ||| || || || |||||||| ||| Sbjct 45886 TCAGGAAGCGCTCGAACAGCAGGCCGAACCGCAGGGGGTCAAGATCGGTGATGGTCAGGG 45827 Query 40275 AGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCT 40334 | ||||||||||||||||||| | ||||| ||||| || || ||| | ||| | | Sbjct 45826 ACCAGGCGACCAGCGAACCGGCGCCAGAGCCCCGCCCCGGCCCCACCGGGATGCCATGTT 45767 Query 40335 CCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCAT---CT 40391 |||||||||| ||||||||| | |||| |||||||||| ||||| ||||| || Sbjct 45766 CCTTGGCCCATTTGATGAAGTCCGACACGATCAGGAAGTAGCCGGGGAAACCCATCTGCT 45707 Query 40392 GGATGATC 40399 |||||||| Sbjct 45706 GGATGATC 45699 Score = 113 bits (124), Expect = 1e-20 Identities = 92/112 (82%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 39229 CTTCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAG 39288 ||||||||||||||| || || ||||| |||||||| | |||||||||||||| || || Sbjct 46827 CTTCTTCTTGCCCATCGCGCGGCGCAGAAGGTCGGCTTCACCCAGGCTGTAGCCCGCCAG 46768 Query 39289 GATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGTACGTC 39340 ||| || || |||| ||||||||||||||||||||||| || || ||| Sbjct 46767 GATTTGGGCGATCTTCATCACCTGCTCCTGGTAGATGATGACGCCATAGGTC 46716 >seq811 Length=194255 Score = 161 bits (178), Expect = 3e-35 Identities = 240/333 (72%), Gaps = 8/333 (2%) Strand=Plus/Plus Query 40091 CCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTG-ACGTACCGGAT 40149 ||||| || |||||| || |||| || ||||||||| || || || || ||||| Sbjct 30627 CCGAACGTGATGATCTGGGCTACCTGATCTCGCCCGTACTT-TCCCTGCACATAGCGGAT 30685 Query 40150 GACCTCGCCGCGACG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGC 40207 ||||| | || || || | || ||||||||| || | ||||||||| || ||||| Sbjct 30686 CACCTCTTCACGGCGGTCCTGACA--GAAGTCGATATCGAAGTCGGGCATCGAAACGCGA 30743 Query 40208 TCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATC 40267 || ||||| ||||| || ||||| | ||| | | || ||||||| ||| || ||| Sbjct 30744 TCCGGGTTGAGGAAGCGTTCGAAAAGCAGCGAGAACCGCAAAGGATCGACGTCAGTAATC 30803 Query 40268 CCGAG-GCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACAC 40326 || ||| |||||||| ||||||||||| ||||||| || || || |||||| | Sbjct 30804 GTCAGCGCA-TAGGCGACGAGCGAACCGGCACCCGAGCCACGGCCCGGCCCGACCGGAAT 30862 Query 40327 GCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCC 40386 ||| | | || ||||| ||| ||||| || |||| |||||||||| |||||| Sbjct 30863 GCCATGGGCTTTCGCCCATTTGATAAAGTCCGCAACGATCAGGAAGTAGCCCGGGAACTT 30922 Query 40387 CATCTGGATGATCATGTCGATCTCGTACTGGAG 40419 ||| || |||| ||| |||||||||| | ||| Sbjct 30923 CATGCGGGTGATGATGCCGATCTCGTATTCGAG 30955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160403544665826