Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_028827.1
Length=50165
Score E
Sequences producing significant alignments: (Bits) Value
seq316 179 1e-40
seq998 176 1e-39
seq827 170 6e-38
seq811 161 3e-35
>seq316
Length=8699
Score = 179 bits (198), Expect = 1e-40
Identities = 288/406 (71%), Gaps = 16/406 (4%)
Strand=Plus/Minus
Query 40009 CTTGGTCAGCTTCTCGCCGACCTGGA---AGGGCTTGTCCAGCACGCGGGCCGCGTCCTT 40065
|||||||||||| ||| ||||| | ||| | | || ||| ||| | ||||
Sbjct 4516 CTTGGTCAGCTTGTCG---ACCTGCCCATACGGCATCTGCAACACCCGGCCGACGTCGCG 4460
Query 40066 CATCGCGTTGCGCGCCTTGATCCGGCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCC 40125
|| | || |||||||| | | |||||||| |||||| ||||| | |||| ||
Sbjct 4459 CAGCACGCCGCGCGCCTGCAACGTTCCGAAGGTGATGATCTGGGCGACGTGATCGGTGCC 4400
Query 40126 GTACTTCTCGGTG-ACGTACCGGATGACCTCGCCGCGACGCCGGTCATC---GAAGTCGA 40181
||| || || ||||| ||| |||||||| ||||||||| | ||||||||
Sbjct 4399 GTAGCGG-CGCTGCACGTAGTCGATTACCTCGCC---ACGCCGGTCCTGACAGAAGTCGA 4344
Query 40182 TGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40241
|||| | ||||||||| |||||||| ||||| || ||||| |||||||| | || |||
Sbjct 4343 TGTCGAAGTCGGGCATCGACACGCGTTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGA 4284
Query 40242 GCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCG 40301
| ||||||||||||||||| ||| | || || |||||||||||||| | |
Sbjct 4283 AACGGATCGGATCGAGGTCGGTGATGGTGAGCGAATATGCCACCAGCGAACCGGCACCGG 4224
Query 40302 AGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGA 40361
|||| ||||| || || || | ||| | | |||||||||| ||||||||||| |
Sbjct 4223 AGCCGCGCCCCGGCCCCACAGGAATGCCCTGCGCCTTGGCCCACTTGATGAAGTCGGACA 4164
Query 40362 CGACCAGGAAGTAGGACGGGA-AGCCCATCTGGATGATCATGTCGA 40406
||| ||||||||| | ||| | | |||| || |||| | |||||
Sbjct 4163 CGATCAGGAAGTA-GCCGGAATATTTCATCCGGGTGATGACGTCGA 4119
Score = 80.6 bits (88), Expect = 9e-11
Identities = 91/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 39231 TCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGA 39290
||||||||||||| || || |||||||||||||| | ||| || ||||| || | ||
Sbjct 5249 TCTTCTTGCCCATCGCGCGGCGCAGCAGGTCGGCGTCGCCGAGCGAATAGCCGGCCATGA 5190
Query 39291 TCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGTACGTCGGGTCCAGGA 39350
|||||| || | |||||| ||||| |||||||||| ||| | || | |||||
Sbjct 5189 CCTGCGCGATCTGCATCACCTGTTCCTGATAGATGATGACGCCGAAGGTTTCCTTCAGGA 5130
Query 39351 TC 39352
||
Sbjct 5129 TC 5128
>seq998
Length=1052685
Score = 176 bits (194), Expect = 1e-39
Identities = 266/372 (72%), Gaps = 10/372 (3%)
Strand=Plus/Minus
Query 40009 CTTGGTCAGCTTCTCGCC--GACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTC 40066
|||||| ||||| ||| | |||| | ||| | | || ||||||| | |||| |
Sbjct 531843 CTTGGTGAGCTTGTCGACCTGACCATAA--GGCATCTGCAACACGCGGCCAACGTCGCGC 531786
Query 40067 ATCGCGTTGCGCGCCTTGATCCGGCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCG 40126
| | || |||||||| | ||||||||| |||||| |||||| ||| ||
Sbjct 531785 AGCACGCCGCGCGCCTGCAGGGTGCCGAAGGTGATGATCTGACCGACCTGATCGCGGCCA 531726
Query 40127 TACTTCTCGGTGACGTACCGGATGACCTCGCCGCGACG--CCGGTCATCGAAGTCGATGT 40184
|| ||| ||||| |||| ||||||||||| || || | || |||||||||||
Sbjct 531725 TAGCGCTCCTGCACGTAATGGATCACCTCGCCGCGGCGATCCTGACA--GAAGTCGATGT 531668
Query 40185 CAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCT 40244
| | ||| ||||| |||||||||||||| || || || || ||||| | || |||
Sbjct 531667 CGAAGTCCGGCATCGACACGCGCTCGGGATTGAGAAAGCGTTCGAACAGCAGGCCGAAGC 531608
Query 40245 CCAGTGGATCGAGGTCGGTGATCCCGAG-GCAGTAGGCGACCAGCGAACCGGCTGCCGAG 40303
||| ||||||||||||||||| || ||| ||||| |||||||| || || | |||
Sbjct 531607 GCAGCGGATCGAGGTCGGTGATGGTCAGCGCA-TAGGCCACCAGCGAGCCCGCGCCGGAG 531549
Query 40304 CCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACG 40363
|| ||||| || |||||| | ||| | | |||| ||||| ||||||||||| |||
Sbjct 531548 CCGCGCCCCGGCCCGACCGGAATGCCCTGCGCCTTCGCCCACTTGATGAAGTCGGACACG 531489
Query 40364 ACCAGGAAGTAG 40375
| ||||||||||
Sbjct 531488 ATCAGGAAGTAG 531477
>seq827
Length=173386
Score = 170 bits (188), Expect = 6e-38
Identities = 260/368 (71%), Gaps = 7/368 (2%)
Strand=Plus/Minus
Query 40037 GGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGGCCGAAG 40096
||| | | ||||||||| || |||| || | | ||||||| | |||||||
Sbjct 46064 GGCATCTGCAGCACGCGCCCCACGTCGCGCAGCACAGCCCGCGCCTGCAGGGTGCCGAAG 46005
Query 40097 GTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATGACCTCG 40156
|| |||||| |||||| ||| ||||| | | || || ||| |||||
Sbjct 46004 GTGATGATCTGCGCGACCCGGTCCTTGCCGTAGTGGGCCTGCACATAGTCGATCACCTCT 45945
Query 40157 CCGCGACGC--CGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGT 40214
| || ||| | | || |||||||||||| | |||||||||||| || || || ||||
Sbjct 45944 TCCCGCCGCTCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATGGAGACCCGTTCCGGGT 45887
Query 40215 TCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGC 40274
||||||| |||||||| | || ||| | ||| || || || |||||||| |||
Sbjct 45886 TCAGGAAGCGCTCGAACAGCAGGCCGAACCGCAGGGGGTCAAGATCGGTGATGGTCAGGG 45827
Query 40275 AGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCT 40334
| ||||||||||||||||||| | ||||| ||||| || || ||| | ||| | |
Sbjct 45826 ACCAGGCGACCAGCGAACCGGCGCCAGAGCCCCGCCCCGGCCCCACCGGGATGCCATGTT 45767
Query 40335 CCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCAT---CT 40391
|||||||||| ||||||||| | |||| |||||||||| ||||| ||||| ||
Sbjct 45766 CCTTGGCCCATTTGATGAAGTCCGACACGATCAGGAAGTAGCCGGGGAAACCCATCTGCT 45707
Query 40392 GGATGATC 40399
||||||||
Sbjct 45706 GGATGATC 45699
Score = 113 bits (124), Expect = 1e-20
Identities = 92/112 (82%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 39229 CTTCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAG 39288
||||||||||||||| || || ||||| |||||||| | |||||||||||||| || ||
Sbjct 46827 CTTCTTCTTGCCCATCGCGCGGCGCAGAAGGTCGGCTTCACCCAGGCTGTAGCCCGCCAG 46768
Query 39289 GATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGTACGTC 39340
||| || || |||| ||||||||||||||||||||||| || || |||
Sbjct 46767 GATTTGGGCGATCTTCATCACCTGCTCCTGGTAGATGATGACGCCATAGGTC 46716
>seq811
Length=194255
Score = 161 bits (178), Expect = 3e-35
Identities = 240/333 (72%), Gaps = 8/333 (2%)
Strand=Plus/Plus
Query 40091 CCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTG-ACGTACCGGAT 40149
||||| || |||||| || |||| || ||||||||| || || || || |||||
Sbjct 30627 CCGAACGTGATGATCTGGGCTACCTGATCTCGCCCGTACTT-TCCCTGCACATAGCGGAT 30685
Query 40150 GACCTCGCCGCGACG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGC 40207
||||| | || || || | || ||||||||| || | ||||||||| || |||||
Sbjct 30686 CACCTCTTCACGGCGGTCCTGACA--GAAGTCGATATCGAAGTCGGGCATCGAAACGCGA 30743
Query 40208 TCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATC 40267
|| ||||| ||||| || ||||| | ||| | | || ||||||| ||| || |||
Sbjct 30744 TCCGGGTTGAGGAAGCGTTCGAAAAGCAGCGAGAACCGCAAAGGATCGACGTCAGTAATC 30803
Query 40268 CCGAG-GCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACAC 40326
|| ||| |||||||| ||||||||||| ||||||| || || || |||||| |
Sbjct 30804 GTCAGCGCA-TAGGCGACGAGCGAACCGGCACCCGAGCCACGGCCCGGCCCGACCGGAAT 30862
Query 40327 GCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCC 40386
||| | | || ||||| ||| ||||| || |||| |||||||||| ||||||
Sbjct 30863 GCCATGGGCTTTCGCCCATTTGATAAAGTCCGCAACGATCAGGAAGTAGCCCGGGAACTT 30922
Query 40387 CATCTGGATGATCATGTCGATCTCGTACTGGAG 40419
||| || |||| ||| |||||||||| | |||
Sbjct 30923 CATGCGGGTGATGATGCCGATCTCGTATTCGAG 30955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160403544665826
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |