Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_028832.1 Length=61511 Score E Sequences producing significant alignments: (Bits) Value seq97 122 3e-23 seq998 82.4 3e-11 seq316 82.4 3e-11 >seq97 Length=479585 Score = 122 bits (134), Expect = 3e-23 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 36110 GTGAATCACCCGTCGCACTACACGTCCCACCCGTCCGGCGTCGAGTGCATCACCATCACC 36169 ||||| | ||| | || |||| |||||| ||| |||| |||||| || || Sbjct 255920 GTGAACCGCCCAGCACATTACAACGGCCACCCAAGCGGTATCGAATGCATCCAGATAGCC 255861 Query 36170 GAACACATGGGGTTCAACCTCGGCAACGCGCTCAAATACATCTGGCGCTGCGACCTGAAG 36229 || || ||| | ||||| ||||| || || || |||||||||||||||||||| |||||| Sbjct 255860 GAGCATATGAGCTTCAATCTCGGAAATGCCCTAAAATACATCTGGCGCTGCGATCTGAAG 255801 Query 36230 AACGACGCAATCGAAGATCTGCGCAAGGCCCGGTTCTACATCGACCGCGAAATCGCGAAA 36289 | |||||||| ||||| ||| || ||||| | ||||||||||| |||||| ||| Sbjct 255800 CAAGACGCAATTGAAGACCTGGAGAAAGCCCGTTGGTACATCGACCGGGAAATCAAGAAG 255741 Query 36290 CG 36291 || Sbjct 255740 CG 255739 >seq998 Length=1052685 Score = 82.4 bits (90), Expect = 3e-11 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 795 GTAGCTCAATTCGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTGC 854 |||||||| || ||||||||| ||||||||||||||| ||| ||||||||||||||||| Sbjct 267583 GTAGCTCAGTT-GGTAGAGCATCGGTCTCCAAAACCGAGGGTCGCAGGTTCGAGTCCTGC 267641 Query 855 CCCGTGTGCCAG 866 | | |||||| Sbjct 267642 CGCCCCTGCCAG 267653 >seq316 Length=8699 Score = 82.4 bits (90), Expect = 3e-11 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 795 GTAGCTCAATTCGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTGC 854 ||||||||||| ||||||||| ||||||||||||||| ||| ||||||||||| ||||| Sbjct 928 GTAGCTCAATT-GGTAGAGCACCGGTCTCCAAAACCGGGGGTCGCAGGTTCGAGCCCTGC 986 Query 855 CCCGTGTGCCAG 866 | | |||||| Sbjct 987 CACTCCTGCCAG 998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 196710098374974