Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq827 150 6e-32 seq316 147 7e-31 seq998 145 2e-30 >seq827 Length=173386 Score = 150 bits (166), Expect = 6e-32 Identities = 179/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 39081 GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGAT 39140 |||||||||||| | ||||||||||||||| || || ||||||||||| |||||||| | Sbjct 45927 GAAGTCGATGTCGAAGTCGGGCATGGAGACCCGTTCCGGGTTCAGGAAGCGCTCGAACAG 45868 Query 39141 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39200 || ||| | | |||||| || |||||||| |||| | ||| ||||||| || Sbjct 45867 CAGGCCGAACCGCAGGGGGTCAAGATCGGTGATGGTCAGGGACCAGGCGACCAGCGAACC 45808 Query 39201 AGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAA 39260 || ||||||| ||||| || || ||| | ||| | ||||| ||||| |||||| Sbjct 45807 GGCGCCAGAGCCCCGCCCCGGCCCCACCGGGATGCCATGTTCCTTGGCCCATTTGATGAA 45748 Query 39261 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTA 39320 ||| | |||| |||||||| ||||| |||||||| | ||| || ||| ||| | Sbjct 45747 GTCCGACACGATCAGGAAGTAGCCGGGGAAACCCATCTGCTGGATGATCCCGACCTCCCA 45688 Query 39321 CTC 39323 ||| Sbjct 45687 CTC 45685 Score = 113 bits (124), Expect = 1e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 38123 CCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTGACCGAGGG 38182 ||| | |||| ||||||||||||||| ||||| || || |||||||| | ||| ||| Sbjct 46840 CCATCTCCTCCTTCTTCTTCTTGCCCATCGCGCGGCGCAGAAGGTCGGCTTCACCCAGGC 46781 Query 38183 TGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGA 38242 |||| || |||||||| || || |||| ||||||||||||||||||||||| || Sbjct 46780 TGTAGCCCGCCAGGATTTGGGCGATCTTCATCACCTGCTCCTGGTAGATGATGACGCCAT 46721 Query 38243 AGGTCGGGTCCAGGATCTCGGCCAGCG 38269 ||||| | ||| | ||| | ||||| Sbjct 46720 AGGTCTCGGTCAGCACCTCCGTCAGCG 46694 >seq316 Length=8699 Score = 147 bits (162), Expect = 7e-31 Identities = 288/418 (69%), Gaps = 11/418 (3%) Strand=Plus/Minus Query 38916 CTTGGTCAGCTTCTCGCCGACCTGGA---AGGGCTTGTCCAGCACGCGGGCCGCGTCCTT 38972 |||||||||||| ||| ||||| | ||| | | || ||| ||| | |||| Sbjct 4516 CTTGGTCAGCTTGTCG---ACCTGCCCATACGGCATCTGCAACACCCGGCCGACGTCGCG 4460 Query 38973 CATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTGTGCGACCTTGTCACTGCC 39032 || | || |||||||| | | |||| | || |||||| ||||| | || |||| Sbjct 4459 CAGCACGCCGCGCGCCTGCAACGTTCCGAAGGTGATGATCTGGGCGACGTGATCGGTGCC 4400 Query 39033 GTACTTCTCGGTG-ACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGT 39091 ||| || || ||||| ||| || |||||||| || | | ||||||||||| Sbjct 4399 GTAGCGG-CGCTGCACGTAGTCGATTACCTCGCCACGCCGGTCCTGACAGAAGTCGATGT 4341 Query 39092 CCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAG 39151 | | ||||||||| || || || || || || ||||| |||||||| | || ||| | Sbjct 4340 CGAAGTCGGGCATCGACACGCGTTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGAAAC 4281 Query 39152 GGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGC 39211 |||| || || ||||||||||| ||| | || || ||||||| || || | |||| Sbjct 4280 GGATCGGATCGAGGTCGGTGATGGTGAGCGAATATGCCACCAGCGAACCGGCACCGGAGC 4221 Query 39212 CGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGA 39271 ||||||| || || || | ||| | | |||| ||||| ||||||||||| |||| Sbjct 4220 CGCGCCCCGGCCCCACAGGAATGCCCTGCGCCTTGGCCCACTTGATGAAGTCGGACACGA 4161 Query 39272 CGAGGAAGTACGACGGGA-ACCCCATCTGGTTGATCATGTCGATCTCGTA-CTCGACC 39327 |||||||| | ||| | | |||| || |||| | ||||| ||| | ||| ||| Sbjct 4160 TCAGGAAGTA-GCCGGAATATTTCATCCGGGTGATGACGTCGAGTTCGAAGCTCAACC 4104 Score = 95.1 bits (104), Expect = 4e-15 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 38115 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTG 38174 || |||| ||| | | || | ||||||||||||| ||||| || || |||||||| | Sbjct 5272 CTGCTTGTCCATCTCGGCGCGGATCTTCTTGCCCATCGCGCGGCGCAGCAGGTCGGCGTC 5213 Query 38175 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38234 ||||| | || ||||||| || |||||| || | |||||| ||||| |||||||| Sbjct 5212 GCCGAGCGAATAGCCGGCCATGACCTGCGCGATCTGCATCACCTGTTCCTGATAGATGAT 5153 Query 38235 GAGCCCGAAGGTCGGGTCCAGGATC 38259 || |||||||| | ||||||| Sbjct 5152 GACGCCGAAGGTTTCCTTCAGGATC 5128 >seq998 Length=1052685 Score = 145 bits (160), Expect = 2e-30 Identities = 254/368 (69%), Gaps = 4/368 (1%) Strand=Plus/Minus Query 38916 CTTGGTCAGCTTCTCGCC--GACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTC 38973 |||||| ||||| ||| | |||| | ||| | | || ||||||| | |||| | Sbjct 531843 CTTGGTGAGCTTGTCGACCTGACCATAA--GGCATCTGCAACACGCGGCCAACGTCGCGC 531786 Query 38974 ATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTGTGCGACCTTGTCACTGCCG 39033 | | || |||||||| | ||| | || |||||| |||||| || | ||| Sbjct 531785 AGCACGCCGCGCGCCTGCAGGGTGCCGAAGGTGATGATCTGACCGACCTGATCGCGGCCA 531726 Query 39034 TACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCC 39093 || ||| ||||| ||||||| ||||| |||||| | | |||||||||||| Sbjct 531725 TAGCGCTCCTGCACGTAATGGATCACCTCGCCGCGGCGATCCTGACAGAAGTCGATGTCG 531666 Query 39094 ACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGG 39153 | ||| ||||| || || ||||| || || || || || ||||| | || ||| | Sbjct 531665 AAGTCCGGCATCGACACGCGCTCGGGATTGAGAAAGCGTTCGAACAGCAGGCCGAAGCGC 531606 Query 39154 ATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCG 39213 | || || ||||||||||| || || || || |||||||||| || | |||||| Sbjct 531605 AGCGGATCGAGGTCGGTGATGGTCAGCGCATAGGCCACCAGCGAGCCCGCGCCGGAGCCG 531546 Query 39214 CGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACG 39273 ||||| || |||||| | ||| | | |||||||||| ||||||||||| |||| Sbjct 531545 CGCCCCGGCCCGACCGGAATGCCCTGCGCCTTCGCCCACTTGATGAAGTCGGACACGATC 531486 Query 39274 AGGAAGTA 39281 |||||||| Sbjct 531485 AGGAAGTA 531478 Score = 93.3 bits (102), Expect = 1e-14 Identities = 392/613 (64%), Gaps = 32/613 (5%) Strand=Plus/Minus Query 37929 GGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAG 37988 ||| || ||| |||| ||||||| |||| ||||| | |||| || |||| | | || Sbjct 532785 GGCGGCGATGAACTCCACCGGGTAATGCGCCTTCATGAACGCGGTCTGGTACGACACCAG 532726 Query 37989 TCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTC 38048 |||| || || | || |||||||||| |||| ||||||| |||||| || Sbjct 532725 CGCGTAGGCGGCGGCATGGCTCTTGTTGAAGCCGTAGTCGGCGAATTTCGCGAGCAACTC 532666 Query 38049 CCACACC-GCCCGGATGGCAGCCTCCGAGTAGCCTCGCTCGCTCGCCCCCTTCTGGAAGT 38107 | | | || ||| || ||| | | || ||||| || || ||| Sbjct 532665 GAAAATCTGCTCGGCCTGCC-CCTTGGTGATGCTGTGCTCGACCGAGCCGGAGACGAAAC 532607 Query 38108 TCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGT 38167 |||| || ||| ||| | | | | ||||||||||||| ||||| || | ||||| Sbjct 532606 GCACGCGCTGCTTTTCCATCTCGGCACGGATCTTCTTGCCCATCGCGCGGCGTAAGAGGT 532547 Query 38168 CGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGT 38227 | |||| ||||| | || || |||| | |||||| || | |||||| ||||| | Sbjct 532546 CCGCCTCGCCGAGCGAATAACCCGCCATCACCTGCGCGATCTGCATCACCTGTTCCTGAT 532487 Query 38228 AGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCGGCTCCTCCACCTCGGGGT 38287 ||||||||| ||||| ||| | |||||| ||||||| |||| || | Sbjct 532486 AGATGATGACGCCGAACGTCTCTTTCAGGAT---------CGGCTCCAGCACC---GGAT 532439 Query 38288 G--GATCGGCGTGATCTCCTGCTGACCGTTCTTGCGGAGGGCGTAGTTCG---TGTGCGA 38342 | ||| | | ||| | | || | |||||| | ||| ||| ||| || Sbjct 532438 GCAGATATTCCGG--CTCTTCGTCGCCATGCTTGCGCGCGCAATAGGTCGGGATGTTCG- 532382 Query 38343 GCCCATGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAACTG 38402 |||||||||||||||| || |||||||| | || |||||||||||| | Sbjct 532381 --------CCATCGGACCCGGACGATAGAGCGCGACCAGCGCGATGATGTCCTCGAAACG 532330 Query 38403 GTCCGGCTTCAGCAGGCGAAGCAGGGAGCGCATCGCGCCG-CCGTCGAGCTGGAAGACCG 38461 ||| || || | |||| | ||||| || | | | || | |||||| || Sbjct 532329 GTCAGGGCGCATGTCGACAAGCGCGCGCCGCAT-GCCCTGACTTTCAACCTGGAACACGC 532271 Query 38462 AGAGGGTGTCGCCCCTGGCCAGCAGCTCGTAGGTTGCCGGGTCGTCCAGCGGGATGTTCT 38521 || |||||| | | ||||| |||||||||| || |||||| ||||| | || | Sbjct 532270 CGACCACGTCGCCACGCGTCAGCATCTCGTAGGTTTCCTTGTCGTCGAGCGGCAGGTGCG 532211 Query 38522 CGATGTCGACGTG 38534 | | ||||| || Sbjct 532210 CCAGATCGACATG 532198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159712356969618