Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_028892.1
Length=49949
Score E
Sequences producing significant alignments: (Bits) Value
seq827 150 6e-32
seq316 147 7e-31
seq998 145 2e-30
>seq827
Length=173386
Score = 150 bits (166), Expect = 6e-32
Identities = 179/243 (74%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 39081 GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGAT 39140
|||||||||||| | ||||||||||||||| || || ||||||||||| |||||||| |
Sbjct 45927 GAAGTCGATGTCGAAGTCGGGCATGGAGACCCGTTCCGGGTTCAGGAAGCGCTCGAACAG 45868
Query 39141 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39200
|| ||| | | |||||| || |||||||| |||| | ||| ||||||| ||
Sbjct 45867 CAGGCCGAACCGCAGGGGGTCAAGATCGGTGATGGTCAGGGACCAGGCGACCAGCGAACC 45808
Query 39201 AGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAA 39260
|| ||||||| ||||| || || ||| | ||| | ||||| ||||| ||||||
Sbjct 45807 GGCGCCAGAGCCCCGCCCCGGCCCCACCGGGATGCCATGTTCCTTGGCCCATTTGATGAA 45748
Query 39261 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTA 39320
||| | |||| |||||||| ||||| |||||||| | ||| || ||| ||| |
Sbjct 45747 GTCCGACACGATCAGGAAGTAGCCGGGGAAACCCATCTGCTGGATGATCCCGACCTCCCA 45688
Query 39321 CTC 39323
|||
Sbjct 45687 CTC 45685
Score = 113 bits (124), Expect = 1e-20
Identities = 113/147 (77%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 38123 CCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTGACCGAGGG 38182
||| | |||| ||||||||||||||| ||||| || || |||||||| | ||| |||
Sbjct 46840 CCATCTCCTCCTTCTTCTTCTTGCCCATCGCGCGGCGCAGAAGGTCGGCTTCACCCAGGC 46781
Query 38183 TGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGA 38242
|||| || |||||||| || || |||| ||||||||||||||||||||||| ||
Sbjct 46780 TGTAGCCCGCCAGGATTTGGGCGATCTTCATCACCTGCTCCTGGTAGATGATGACGCCAT 46721
Query 38243 AGGTCGGGTCCAGGATCTCGGCCAGCG 38269
||||| | ||| | ||| | |||||
Sbjct 46720 AGGTCTCGGTCAGCACCTCCGTCAGCG 46694
>seq316
Length=8699
Score = 147 bits (162), Expect = 7e-31
Identities = 288/418 (69%), Gaps = 11/418 (3%)
Strand=Plus/Minus
Query 38916 CTTGGTCAGCTTCTCGCCGACCTGGA---AGGGCTTGTCCAGCACGCGGGCCGCGTCCTT 38972
|||||||||||| ||| ||||| | ||| | | || ||| ||| | ||||
Sbjct 4516 CTTGGTCAGCTTGTCG---ACCTGCCCATACGGCATCTGCAACACCCGGCCGACGTCGCG 4460
Query 38973 CATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTGTGCGACCTTGTCACTGCC 39032
|| | || |||||||| | | |||| | || |||||| ||||| | || ||||
Sbjct 4459 CAGCACGCCGCGCGCCTGCAACGTTCCGAAGGTGATGATCTGGGCGACGTGATCGGTGCC 4400
Query 39033 GTACTTCTCGGTG-ACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGT 39091
||| || || ||||| ||| || |||||||| || | | |||||||||||
Sbjct 4399 GTAGCGG-CGCTGCACGTAGTCGATTACCTCGCCACGCCGGTCCTGACAGAAGTCGATGT 4341
Query 39092 CCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAG 39151
| | ||||||||| || || || || || || ||||| |||||||| | || ||| |
Sbjct 4340 CGAAGTCGGGCATCGACACGCGTTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGAAAC 4281
Query 39152 GGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGC 39211
|||| || || ||||||||||| ||| | || || ||||||| || || | ||||
Sbjct 4280 GGATCGGATCGAGGTCGGTGATGGTGAGCGAATATGCCACCAGCGAACCGGCACCGGAGC 4221
Query 39212 CGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGA 39271
||||||| || || || | ||| | | |||| ||||| ||||||||||| ||||
Sbjct 4220 CGCGCCCCGGCCCCACAGGAATGCCCTGCGCCTTGGCCCACTTGATGAAGTCGGACACGA 4161
Query 39272 CGAGGAAGTACGACGGGA-ACCCCATCTGGTTGATCATGTCGATCTCGTA-CTCGACC 39327
|||||||| | ||| | | |||| || |||| | ||||| ||| | ||| |||
Sbjct 4160 TCAGGAAGTA-GCCGGAATATTTCATCCGGGTGATGACGTCGAGTTCGAAGCTCAACC 4104
Score = 95.1 bits (104), Expect = 4e-15
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 38115 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTG 38174
|| |||| ||| | | || | ||||||||||||| ||||| || || |||||||| |
Sbjct 5272 CTGCTTGTCCATCTCGGCGCGGATCTTCTTGCCCATCGCGCGGCGCAGCAGGTCGGCGTC 5213
Query 38175 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38234
||||| | || ||||||| || |||||| || | |||||| ||||| ||||||||
Sbjct 5212 GCCGAGCGAATAGCCGGCCATGACCTGCGCGATCTGCATCACCTGTTCCTGATAGATGAT 5153
Query 38235 GAGCCCGAAGGTCGGGTCCAGGATC 38259
|| |||||||| | |||||||
Sbjct 5152 GACGCCGAAGGTTTCCTTCAGGATC 5128
>seq998
Length=1052685
Score = 145 bits (160), Expect = 2e-30
Identities = 254/368 (69%), Gaps = 4/368 (1%)
Strand=Plus/Minus
Query 38916 CTTGGTCAGCTTCTCGCC--GACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTC 38973
|||||| ||||| ||| | |||| | ||| | | || ||||||| | |||| |
Sbjct 531843 CTTGGTGAGCTTGTCGACCTGACCATAA--GGCATCTGCAACACGCGGCCAACGTCGCGC 531786
Query 38974 ATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTGTGCGACCTTGTCACTGCCG 39033
| | || |||||||| | ||| | || |||||| |||||| || | |||
Sbjct 531785 AGCACGCCGCGCGCCTGCAGGGTGCCGAAGGTGATGATCTGACCGACCTGATCGCGGCCA 531726
Query 39034 TACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCC 39093
|| ||| ||||| ||||||| ||||| |||||| | | ||||||||||||
Sbjct 531725 TAGCGCTCCTGCACGTAATGGATCACCTCGCCGCGGCGATCCTGACAGAAGTCGATGTCG 531666
Query 39094 ACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGG 39153
| ||| ||||| || || ||||| || || || || || ||||| | || ||| |
Sbjct 531665 AAGTCCGGCATCGACACGCGCTCGGGATTGAGAAAGCGTTCGAACAGCAGGCCGAAGCGC 531606
Query 39154 ATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCG 39213
| || || ||||||||||| || || || || |||||||||| || | ||||||
Sbjct 531605 AGCGGATCGAGGTCGGTGATGGTCAGCGCATAGGCCACCAGCGAGCCCGCGCCGGAGCCG 531546
Query 39214 CGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACG 39273
||||| || |||||| | ||| | | |||||||||| ||||||||||| ||||
Sbjct 531545 CGCCCCGGCCCGACCGGAATGCCCTGCGCCTTCGCCCACTTGATGAAGTCGGACACGATC 531486
Query 39274 AGGAAGTA 39281
||||||||
Sbjct 531485 AGGAAGTA 531478
Score = 93.3 bits (102), Expect = 1e-14
Identities = 392/613 (64%), Gaps = 32/613 (5%)
Strand=Plus/Minus
Query 37929 GGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAG 37988
||| || ||| |||| ||||||| |||| ||||| | |||| || |||| | | ||
Sbjct 532785 GGCGGCGATGAACTCCACCGGGTAATGCGCCTTCATGAACGCGGTCTGGTACGACACCAG 532726
Query 37989 TCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTC 38048
|||| || || | || |||||||||| |||| ||||||| |||||| ||
Sbjct 532725 CGCGTAGGCGGCGGCATGGCTCTTGTTGAAGCCGTAGTCGGCGAATTTCGCGAGCAACTC 532666
Query 38049 CCACACC-GCCCGGATGGCAGCCTCCGAGTAGCCTCGCTCGCTCGCCCCCTTCTGGAAGT 38107
| | | || ||| || ||| | | || ||||| || || |||
Sbjct 532665 GAAAATCTGCTCGGCCTGCC-CCTTGGTGATGCTGTGCTCGACCGAGCCGGAGACGAAAC 532607
Query 38108 TCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGT 38167
|||| || ||| ||| | | | | ||||||||||||| ||||| || | |||||
Sbjct 532606 GCACGCGCTGCTTTTCCATCTCGGCACGGATCTTCTTGCCCATCGCGCGGCGTAAGAGGT 532547
Query 38168 CGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGT 38227
| |||| ||||| | || || |||| | |||||| || | |||||| ||||| |
Sbjct 532546 CCGCCTCGCCGAGCGAATAACCCGCCATCACCTGCGCGATCTGCATCACCTGTTCCTGAT 532487
Query 38228 AGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCGGCTCCTCCACCTCGGGGT 38287
||||||||| ||||| ||| | |||||| ||||||| |||| || |
Sbjct 532486 AGATGATGACGCCGAACGTCTCTTTCAGGAT---------CGGCTCCAGCACC---GGAT 532439
Query 38288 G--GATCGGCGTGATCTCCTGCTGACCGTTCTTGCGGAGGGCGTAGTTCG---TGTGCGA 38342
| ||| | | ||| | | || | |||||| | ||| ||| ||| ||
Sbjct 532438 GCAGATATTCCGG--CTCTTCGTCGCCATGCTTGCGCGCGCAATAGGTCGGGATGTTCG- 532382
Query 38343 GCCCATGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAACTG 38402
|||||||||||||||| || |||||||| | || |||||||||||| |
Sbjct 532381 --------CCATCGGACCCGGACGATAGAGCGCGACCAGCGCGATGATGTCCTCGAAACG 532330
Query 38403 GTCCGGCTTCAGCAGGCGAAGCAGGGAGCGCATCGCGCCG-CCGTCGAGCTGGAAGACCG 38461
||| || || | |||| | ||||| || | | | || | |||||| ||
Sbjct 532329 GTCAGGGCGCATGTCGACAAGCGCGCGCCGCAT-GCCCTGACTTTCAACCTGGAACACGC 532271
Query 38462 AGAGGGTGTCGCCCCTGGCCAGCAGCTCGTAGGTTGCCGGGTCGTCCAGCGGGATGTTCT 38521
|| |||||| | | ||||| |||||||||| || |||||| ||||| | || |
Sbjct 532270 CGACCACGTCGCCACGCGTCAGCATCTCGTAGGTTTCCTTGTCGTCGAGCGGCAGGTGCG 532211
Query 38522 CGATGTCGACGTG 38534
| | ||||| ||
Sbjct 532210 CCAGATCGACATG 532198
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 159712356969618
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |