Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_028945.1 Length=206713 Score E Sequences producing significant alignments: (Bits) Value seq1482 109 7e-19 seq713 96.9 5e-15 >seq1482 Length=483770 Score = 109 bits (120), Expect = 7e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 181461 GTCAGGAGCGCGTAAGAGGCGATGTTGAAGGGAAGCCCCAAGAAGACGTCCACGGACCGC 181520 ||||| ||||| || || ||||||||||| || | || | |||||| || |||| ||| Sbjct 421931 GTCAGCAGCGCATAGGATGCGATGTTGAACGGCACGCCGAGGAAGACATCAGCGGAGCGC 421872 Query 181521 TGATTCCAAAGGCAGGACAGTTTGTCATTGCGAACATAGAACTGGAATCCGTAGTGGCAC 181580 |||| |||| ||||||||| | ||| ||||||||||| || | | |||||| Sbjct 421871 TGATAGAGCTGGCACGACAGTTTGCCGTTGGCGACATAGAACTGAAACAGGCAATGGCAC 421812 Query 181581 GGCGGCAAAGCCATTAGATCGACCGCGCCGACATTCCAAGCCGAGACCAT 181630 || |||| ||||| ||||||| || || |||||| |||||||| || Sbjct 421811 GGGGGCAGCGCCATCTTATCGACCTCGGCGGGATTCCACGCCGAGACGAT 421762 >seq713 Length=1192841 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 152803 AAAGCTTCTTGTGCTGGACGAATGTTCGATGGTCAATGCGGAAATGCTTCTCGACTTGTT 152862 |||||| | || | |||||||| ||||||||| |||| ||| | | |||| || | Sbjct 113493 AAAGCTGATCGTCATCGACGAATGCTCGATGGTCGATGCCGAACTCGGCCGCGACCTGAT 113434 Query 152863 TACATTCGAAATTCCGATGCTGGTGCTAGGCGATCCCGGACAGCTTCCGCCAATCGAAGG 152922 | |||||| |||| | ||||||| |||||||||| ||||||||||| || |||| Sbjct 113433 GTCGTTCGAATGTCCGCTATTGGTGCTCGGCGATCCCGCGCAGCTTCCGCCGATTCAAGG 113374 Query 152923 CAGGAGTCCGCTTACTGATGTTCG-CCCGGATGCGATGTTGACGGAAATCCATCGACAGG 152981 | | || | || ||| | || ||||| |||||| |||| ||| | ||||| |||| Sbjct 113373 CGGCGGTTTTTTCACCGAT-TCCGAGCCGGACGCGATGCTGACCGAAGTGCATCGTCAGG 113315 Query 152982 CAGAAGGCAACCCGATCATC 153001 | || | | |||||| || Sbjct 113314 CCGAGCACGATCCGATCGTC 113295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 661341207886920