Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_028947.1 Length=62738 Score E Sequences producing significant alignments: (Bits) Value seq97 118 4e-22 seq998 82.4 3e-11 seq316 82.4 3e-11 >seq97 Length=479585 Score = 118 bits (130), Expect = 4e-22 Identities = 137/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 36369 CGACGTCGTGAACCACCCGGCGCACTACA-CGTCGCATCCCAGCGGAGTCGAGTGCATCA 36427 |||| |||||||| ||| || || |||| || | || || ||||| |||| |||||| Sbjct 255927 CGACAACGTGAACCGCCCAGCACATTACAACGGC-CACCCAAGCGGTATCGAATGCATCC 255869 Query 36428 CCGTCACTGAGCACATGGGCTTCAACCTCGGCAACGCCGTTAAGTACATCTGGCGCTGCG 36487 | | ||||| ||| ||||||| ||||| || ||| | || |||||||||||||||| Sbjct 255868 AGATAGCCGAGCATATGAGCTTCAATCTCGGAAATGCCCTAAAATACATCTGGCGCTGCG 255809 Query 36488 ACCTGAAGCGCGACGCGATCGAGGATCTGCGCAAGGCACGGTTCTACATCGACCGTGAAA 36547 | ||||||| ||||| || || || ||| || || || | ||||||||||| |||| Sbjct 255808 ATCTGAAGCAAGACGCAATTGAAGACCTGGAGAAAGCCCGTTGGTACATCGACCGGGAAA 255749 Query 36548 TC 36549 || Sbjct 255748 TC 255747 >seq998 Length=1052685 Score = 82.4 bits (90), Expect = 3e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 593 TAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTGC 650 ||||||| ||||||||||| ||||||||||||||| ||| ||||||||||||||||| Sbjct 267584 TAGCTCAGTTGGTAGAGCATCGGTCTCCAAAACCGAGGGTCGCAGGTTCGAGTCCTGC 267641 >seq316 Length=8699 Score = 82.4 bits (90), Expect = 3e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 593 TAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTGC 650 ||||||||||||||||||| ||||||||||||||| ||| ||||||||||| ||||| Sbjct 929 TAGCTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGGGTCGCAGGTTCGAGCCCTGC 986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200633134553761