Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_028976.1
Length=50113
Score E
Sequences producing significant alignments: (Bits) Value
seq998 156 1e-33
seq316 147 7e-31
seq827 143 9e-30
>seq998
Length=1052685
Score = 156 bits (172), Expect = 1e-33
Identities = 283/412 (69%), Gaps = 4/412 (1%)
Strand=Plus/Minus
Query 39349 CTTGGTCAGCTTCTCGCC--GACCTGAAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTC 39406
|||||| ||||| ||| | |||| || ||| | | || ||||||| | |||| |
Sbjct 531843 CTTGGTGAGCTTGTCGACCTGACCATAA--GGCATCTGCAACACGCGGCCAACGTCGCGC 531786
Query 39407 ATCGCGTTGCGGGCCTTGATCCTGCCGTACGTCGCGATCTGTGCGACCTTGTCGCTGCCG 39466
| | || ||| |||| | ||||| | || |||||| |||||| |||| |||
Sbjct 531785 AGCACGCCGCGCGCCTGCAGGGTGCCGAAGGTGATGATCTGACCGACCTGATCGCGGCCA 531726
Query 39467 TACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCC 39526
|| ||| ||||| ||||||| ||||| |||||| | | ||||||||||||
Sbjct 531725 TAGCGCTCCTGCACGTAATGGATCACCTCGCCGCGGCGATCCTGACAGAAGTCGATGTCG 531666
Query 39527 ACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGG 39586
| ||| ||||| || |||||||| || || || || || ||||| | || ||| |
Sbjct 531665 AAGTCCGGCATCGACACGCGCTCGGGATTGAGAAAGCGTTCGAACAGCAGGCCGAAGCGC 531606
Query 39587 ATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCA 39646
| || || ||||||||||| || || || || |||||||||| || | |||||
Sbjct 531605 AGCGGATCGAGGTCGGTGATGGTCAGCGCATAGGCCACCAGCGAGCCCGCGCCGGAGCCG 531546
Query 39647 CGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACG 39706
||||| || |||||| | || | | |||||||||| ||||||||||| ||||
Sbjct 531545 CGCCCCGGCCCGACCGGAATGCCCTGCGCCTTCGCCCACTTGATGAAGTCGGACACGATC 531486
Query 39707 AGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTAGTCGA 39758
|||||||| ||| | |||| | ||||| | |||| ||| || |||
Sbjct 531485 AGGAAGTAGCCCGGATATTTCATCCGCTTGATGACATCGAGTTCGAAGGCGA 531434
Score = 80.6 bits (88), Expect = 9e-11
Identities = 91/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 38571 TCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGA 38630
||||||||||||| ||||| || | ||||| |||| ||||| | || || |||| |
Sbjct 532576 TCTTCTTGCCCATCGCGCGGCGTAAGAGGTCCGCCTCGCCGAGCGAATAACCCGCCATCA 532517
Query 38631 TCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGA 38690
|||||| || | |||||| ||||| |||||||||| ||||| ||| | |||||
Sbjct 532516 CCTGCGCGATCTGCATCACCTGTTCCTGATAGATGATGACGCCGAACGTCTCTTTCAGGA 532457
Query 38691 TC 38692
||
Sbjct 532456 TC 532455
>seq316
Length=8699
Score = 147 bits (162), Expect = 7e-31
Identities = 283/411 (69%), Gaps = 10/411 (2%)
Strand=Plus/Minus
Query 39349 CTTGGTCAGCTTCTCGCCGACCTG---AAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTT 39405
|||||||||||| ||| ||||| | | ||| | | || ||| ||| | ||||
Sbjct 4516 CTTGGTCAGCTTGTCG---ACCTGCCCATACGGCATCTGCAACACCCGGCCGACGTCGCG 4460
Query 39406 CATCGCGTTGCGGGCCTTGATCCTGCCGTACGTCGCGATCTGTGCGACCTTGTCGCTGCC 39465
|| | || ||| |||| | | | ||| | || |||||| ||||| | ||| ||||
Sbjct 4459 CAGCACGCCGCGCGCCTGCAACGTTCCGAAGGTGATGATCTGGGCGACGTGATCGGTGCC 4400
Query 39466 GTACTTCTCGGTG-ACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGT 39524
||| || || ||||| ||| || |||||||| || | | |||||||||||
Sbjct 4399 GTAGCGG-CGCTGCACGTAGTCGATTACCTCGCCACGCCGGTCCTGACAGAAGTCGATGT 4341
Query 39525 CCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAG 39584
| | ||||||||| || ||||| || || || ||||| |||||||| | || ||| |
Sbjct 4340 CGAAGTCGGGCATCGACACGCGTTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGAAAC 4281
Query 39585 GGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGC 39644
|||| || || ||||||||||| ||| | || || ||||||| || || | ||||
Sbjct 4280 GGATCGGATCGAGGTCGGTGATGGTGAGCGAATATGCCACCAGCGAACCGGCACCGGAGC 4221
Query 39645 CACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGA 39704
| ||||| || || || | || | | |||| ||||| ||||||||||| ||||
Sbjct 4220 CGCGCCCCGGCCCCACAGGAATGCCCTGCGCCTTGGCCCACTTGATGAAGTCGGACACGA 4161
Query 39705 CGAGGAAGTACGACGGGA-ACCCCATCTGGTTGATCATGTCGATCTCGTAG 39754
|||||||| | ||| | | |||| || |||| | ||||| ||| ||
Sbjct 4160 TCAGGAAGTA-GCCGGAATATTTCATCCGGGTGATGACGTCGAGTTCGAAG 4111
Score = 95.1 bits (104), Expect = 4e-15
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 38548 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTG 38607
|| |||| ||| | | || | ||||||||||||| ||||| || || |||||||| |
Sbjct 5272 CTGCTTGTCCATCTCGGCGCGGATCTTCTTGCCCATCGCGCGGCGCAGCAGGTCGGCGTC 5213
Query 38608 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38667
||||| | || ||||||| || |||||| || | |||||| ||||| ||||||||
Sbjct 5212 GCCGAGCGAATAGCCGGCCATGACCTGCGCGATCTGCATCACCTGTTCCTGATAGATGAT 5153
Query 38668 GAGCCCGAAGGTCGGGTCCAGGATC 38692
|| |||||||| | |||||||
Sbjct 5152 GACGCCGAAGGTTTCCTTCAGGATC 5128
>seq827
Length=173386
Score = 143 bits (158), Expect = 9e-30
Identities = 174/237 (73%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 39514 GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGAT 39573
|||||||||||| | ||||||||||||||| || || ||||||||||| |||||||| |
Sbjct 45927 GAAGTCGATGTCGAAGTCGGGCATGGAGACCCGTTCCGGGTTCAGGAAGCGCTCGAACAG 45868
Query 39574 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39633
|| ||| | | |||||| || |||||||| |||| | ||| ||||||| ||
Sbjct 45867 CAGGCCGAACCGCAGGGGGTCAAGATCGGTGATGGTCAGGGACCAGGCGACCAGCGAACC 45808
Query 39634 AGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAA 39693
|| ||||||| ||||| || || ||| | || | ||||| ||||| ||||||
Sbjct 45807 GGCGCCAGAGCCCCGCCCCGGCCCCACCGGGATGCCATGTTCCTTGGCCCATTTGATGAA 45748
Query 39694 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTC 39750
||| | |||| |||||||| ||||| |||||||| | ||| || ||| |||
Sbjct 45747 GTCCGACACGATCAGGAAGTAGCCGGGGAAACCCATCTGCTGGATGATCCCGACCTC 45691
Score = 116 bits (128), Expect = 1e-21
Identities = 114/147 (78%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 38556 CCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTGACCGAGGG 38615
||| | |||| ||||||||||||||| ||||| || ||||||||||| | ||| |||
Sbjct 46840 CCATCTCCTCCTTCTTCTTCTTGCCCATCGCGCGGCGCAGAAGGTCGGCTTCACCCAGGC 46781
Query 38616 TGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGA 38675
|||| || |||||||| || || |||| ||||||||||||||||||||||| ||
Sbjct 46780 TGTAGCCCGCCAGGATTTGGGCGATCTTCATCACCTGCTCCTGGTAGATGATGACGCCAT 46721
Query 38676 AGGTCGGGTCCAGGATCTCGGCCAGCG 38702
||||| | ||| | ||| | |||||
Sbjct 46720 AGGTCTCGGTCAGCACCTCCGTCAGCG 46694
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160237147627850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |