Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq998 156 1e-33 seq316 147 7e-31 seq827 143 9e-30 >seq998 Length=1052685 Score = 156 bits (172), Expect = 1e-33 Identities = 283/412 (69%), Gaps = 4/412 (1%) Strand=Plus/Minus Query 39349 CTTGGTCAGCTTCTCGCC--GACCTGAAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTC 39406 |||||| ||||| ||| | |||| || ||| | | || ||||||| | |||| | Sbjct 531843 CTTGGTGAGCTTGTCGACCTGACCATAA--GGCATCTGCAACACGCGGCCAACGTCGCGC 531786 Query 39407 ATCGCGTTGCGGGCCTTGATCCTGCCGTACGTCGCGATCTGTGCGACCTTGTCGCTGCCG 39466 | | || ||| |||| | ||||| | || |||||| |||||| |||| ||| Sbjct 531785 AGCACGCCGCGCGCCTGCAGGGTGCCGAAGGTGATGATCTGACCGACCTGATCGCGGCCA 531726 Query 39467 TACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCC 39526 || ||| ||||| ||||||| ||||| |||||| | | |||||||||||| Sbjct 531725 TAGCGCTCCTGCACGTAATGGATCACCTCGCCGCGGCGATCCTGACAGAAGTCGATGTCG 531666 Query 39527 ACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGG 39586 | ||| ||||| || |||||||| || || || || || ||||| | || ||| | Sbjct 531665 AAGTCCGGCATCGACACGCGCTCGGGATTGAGAAAGCGTTCGAACAGCAGGCCGAAGCGC 531606 Query 39587 ATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCA 39646 | || || ||||||||||| || || || || |||||||||| || | ||||| Sbjct 531605 AGCGGATCGAGGTCGGTGATGGTCAGCGCATAGGCCACCAGCGAGCCCGCGCCGGAGCCG 531546 Query 39647 CGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACG 39706 ||||| || |||||| | || | | |||||||||| ||||||||||| |||| Sbjct 531545 CGCCCCGGCCCGACCGGAATGCCCTGCGCCTTCGCCCACTTGATGAAGTCGGACACGATC 531486 Query 39707 AGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTAGTCGA 39758 |||||||| ||| | |||| | ||||| | |||| ||| || ||| Sbjct 531485 AGGAAGTAGCCCGGATATTTCATCCGCTTGATGACATCGAGTTCGAAGGCGA 531434 Score = 80.6 bits (88), Expect = 9e-11 Identities = 91/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 38571 TCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGA 38630 ||||||||||||| ||||| || | ||||| |||| ||||| | || || |||| | Sbjct 532576 TCTTCTTGCCCATCGCGCGGCGTAAGAGGTCCGCCTCGCCGAGCGAATAACCCGCCATCA 532517 Query 38631 TCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGA 38690 |||||| || | |||||| ||||| |||||||||| ||||| ||| | ||||| Sbjct 532516 CCTGCGCGATCTGCATCACCTGTTCCTGATAGATGATGACGCCGAACGTCTCTTTCAGGA 532457 Query 38691 TC 38692 || Sbjct 532456 TC 532455 >seq316 Length=8699 Score = 147 bits (162), Expect = 7e-31 Identities = 283/411 (69%), Gaps = 10/411 (2%) Strand=Plus/Minus Query 39349 CTTGGTCAGCTTCTCGCCGACCTG---AAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTT 39405 |||||||||||| ||| ||||| | | ||| | | || ||| ||| | |||| Sbjct 4516 CTTGGTCAGCTTGTCG---ACCTGCCCATACGGCATCTGCAACACCCGGCCGACGTCGCG 4460 Query 39406 CATCGCGTTGCGGGCCTTGATCCTGCCGTACGTCGCGATCTGTGCGACCTTGTCGCTGCC 39465 || | || ||| |||| | | | ||| | || |||||| ||||| | ||| |||| Sbjct 4459 CAGCACGCCGCGCGCCTGCAACGTTCCGAAGGTGATGATCTGGGCGACGTGATCGGTGCC 4400 Query 39466 GTACTTCTCGGTG-ACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGT 39524 ||| || || ||||| ||| || |||||||| || | | ||||||||||| Sbjct 4399 GTAGCGG-CGCTGCACGTAGTCGATTACCTCGCCACGCCGGTCCTGACAGAAGTCGATGT 4341 Query 39525 CCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAG 39584 | | ||||||||| || ||||| || || || ||||| |||||||| | || ||| | Sbjct 4340 CGAAGTCGGGCATCGACACGCGTTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGAAAC 4281 Query 39585 GGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGC 39644 |||| || || ||||||||||| ||| | || || ||||||| || || | |||| Sbjct 4280 GGATCGGATCGAGGTCGGTGATGGTGAGCGAATATGCCACCAGCGAACCGGCACCGGAGC 4221 Query 39645 CACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGA 39704 | ||||| || || || | || | | |||| ||||| ||||||||||| |||| Sbjct 4220 CGCGCCCCGGCCCCACAGGAATGCCCTGCGCCTTGGCCCACTTGATGAAGTCGGACACGA 4161 Query 39705 CGAGGAAGTACGACGGGA-ACCCCATCTGGTTGATCATGTCGATCTCGTAG 39754 |||||||| | ||| | | |||| || |||| | ||||| ||| || Sbjct 4160 TCAGGAAGTA-GCCGGAATATTTCATCCGGGTGATGACGTCGAGTTCGAAG 4111 Score = 95.1 bits (104), Expect = 4e-15 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 38548 CTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTG 38607 || |||| ||| | | || | ||||||||||||| ||||| || || |||||||| | Sbjct 5272 CTGCTTGTCCATCTCGGCGCGGATCTTCTTGCCCATCGCGCGGCGCAGCAGGTCGGCGTC 5213 Query 38608 ACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGAT 38667 ||||| | || ||||||| || |||||| || | |||||| ||||| |||||||| Sbjct 5212 GCCGAGCGAATAGCCGGCCATGACCTGCGCGATCTGCATCACCTGTTCCTGATAGATGAT 5153 Query 38668 GAGCCCGAAGGTCGGGTCCAGGATC 38692 || |||||||| | ||||||| Sbjct 5152 GACGCCGAAGGTTTCCTTCAGGATC 5128 >seq827 Length=173386 Score = 143 bits (158), Expect = 9e-30 Identities = 174/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 39514 GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGAT 39573 |||||||||||| | ||||||||||||||| || || ||||||||||| |||||||| | Sbjct 45927 GAAGTCGATGTCGAAGTCGGGCATGGAGACCCGTTCCGGGTTCAGGAAGCGCTCGAACAG 45868 Query 39574 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39633 || ||| | | |||||| || |||||||| |||| | ||| ||||||| || Sbjct 45867 CAGGCCGAACCGCAGGGGGTCAAGATCGGTGATGGTCAGGGACCAGGCGACCAGCGAACC 45808 Query 39634 AGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAA 39693 || ||||||| ||||| || || ||| | || | ||||| ||||| |||||| Sbjct 45807 GGCGCCAGAGCCCCGCCCCGGCCCCACCGGGATGCCATGTTCCTTGGCCCATTTGATGAA 45748 Query 39694 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTC 39750 ||| | |||| |||||||| ||||| |||||||| | ||| || ||| ||| Sbjct 45747 GTCCGACACGATCAGGAAGTAGCCGGGGAAACCCATCTGCTGGATGATCCCGACCTC 45691 Score = 116 bits (128), Expect = 1e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 38556 CCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTGACCGAGGG 38615 ||| | |||| ||||||||||||||| ||||| || ||||||||||| | ||| ||| Sbjct 46840 CCATCTCCTCCTTCTTCTTCTTGCCCATCGCGCGGCGCAGAAGGTCGGCTTCACCCAGGC 46781 Query 38616 TGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGA 38675 |||| || |||||||| || || |||| ||||||||||||||||||||||| || Sbjct 46780 TGTAGCCCGCCAGGATTTGGGCGATCTTCATCACCTGCTCCTGGTAGATGATGACGCCAT 46721 Query 38676 AGGTCGGGTCCAGGATCTCGGCCAGCG 38702 ||||| | ||| | ||| | ||||| Sbjct 46720 AGGTCTCGGTCAGCACCTCCGTCAGCG 46694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160237147627850