Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq1494 102 3e-17 seq811 93.3 1e-14 seq1095 89.7 2e-13 seq854 86.0 2e-12 seq249 82.4 2e-11 >seq1494 Length=1074632 Score = 102 bits (112), Expect = 3e-17 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 18116 CGGCAATCGGGTCAATGAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCTCGCCAGAGA 18175 || ||| || || | || ||| ||||||||||| || || ||||| |||| || | || Sbjct 369190 CGACAACCGCGTGCAGGAAATCACCGAGATCACCACCAGCCTGAAGGCGCTGGCGAAGGA 369249 Query 18176 GCTCGATATCGCCGTCGTTTTGCTGTCGCAGCTTAATCGAG-CAG-TCGAGAGCA-GAGA 18232 ||| || | | || | ||| |||||||| ||| | ||| |||| ||| | || Sbjct 369250 GCTGAATGTTCCGATCATCGCGCTTTCGCAGCTC--TCGCGTCAGGTCGA-AGCGCGTGA 369306 Query 18233 GGATAAGCGACCTCTTCTCTCAGACCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCGA 18292 || ||||| || | ||| | |||||||| || ||||| ||||||||||||||||||| Sbjct 369307 CGACAAGCGCCCGCAACTCGCCGACCTTCGTGAATCCGGCTCGATCGAGCAGGACGCCGA 369366 Query 18293 CATGATCGCGTTCTTGTTCCGTGAGGCCTACTACCT 18328 | || | |||| | ||||| |||| |||||||| Sbjct 369367 CGTGGTGCTGTTCGTATTCCGCGAGGAGTACTACCT 369402 >seq811 Length=194255 Score = 93.3 bits (102), Expect = 1e-14 Identities = 70/81 (86%), Gaps = 10/81 (12%) Strand=Plus/Plus Query 6 CTGGGGGTCAAGGGGTCGTGGGTTCGAATCCCGCCGCTCCGACCA-TTTTCT-------- 56 ||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 133978 CTGGGGGTCAAGGGGTCGTGGGTTCGAATCCCGCCGCTCCGACCATTTTTCTTCCCCAAA 134037 Query 57 CCTTTATTTTCA-ATGATCTT 76 |||||||||||| | |||||| Sbjct 134038 CCTTTATTTTCATACGATCTT 134058 >seq1095 Length=1089284 Score = 89.7 bits (98), Expect = 2e-13 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 18120 AATCGGGTCAATGAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCTCGCCAGAGAGCTC 18179 ||||| || | || || ||||||||||| || | ||||| |||| |||| || || Sbjct 360195 AATCGCGTGCAGGAAGTCACCGAGATCACCACCAACCTGAAGGCGCTGGCCAAGGAACTG 360136 Query 18180 GATATCGCCGTCGTTTTGCTGTCGCAGCTTAATCGAG-CAG-TCGAGAGCAGAGAGGATA 18237 | || | |||| ||||||||| | ||| | ||| |||||| | | || || | Sbjct 360135 AACGTCCCGATCGTCGCGCTGTCGCAATTG--TCGCGTCAGGTCGAGAACCGCGACGACA 360078 Query 18238 AGCGACCTCTTCTCTCAGACCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCGACATGA 18297 |||| || | ||| | |||||||| || ||||| ||||||| |||||||||||| | Sbjct 360077 AGCGCCCGCAACTCGCCGACCTTCGTGAATCCGGCTCGATCGAACAGGACGCCGACGTCG 360018 Query 18298 TCGCGTTCTTGTTCCGTGAGGCCTACTACCTC 18329 ||| ||| | | || |||| ||||| ||| Sbjct 360017 TCGTCTTCGTCTATCGCGAGGAATACTATCTC 359986 >seq854 Length=160767 Score = 86.0 bits (94), Expect = 2e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| || |||||||||||||||||| ||||||||||| ||||| ||||||| |||| Sbjct 159183 CGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCACAGGTTCAAATC 159124 Query 21210 CTGTCTCCGCAACCA 21224 ||||| ||||||||| Sbjct 159123 CTGTCCCCGCAACCA 159109 >seq249 Length=9465 Score = 82.4 bits (90), Expect = 2e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| || |||||||||||||||||| ||||||||||| ||| ||||||||| |||| Sbjct 3476 CGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAATC 3417 Query 21210 CTGTCTCCGCAACCA 21224 ||| | ||||||||| Sbjct 3416 CTGCCCCCGCAACCA 3402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162521906956982