Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_029046.1
Length=50827
Score E
Sequences producing significant alignments: (Bits) Value
seq1494 102 3e-17
seq811 93.3 1e-14
seq1095 89.7 2e-13
seq854 86.0 2e-12
seq249 82.4 2e-11
>seq1494
Length=1074632
Score = 102 bits (112), Expect = 3e-17
Identities = 156/216 (72%), Gaps = 6/216 (3%)
Strand=Plus/Plus
Query 18116 CGGCAATCGGGTCAATGAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCTCGCCAGAGA 18175
|| ||| || || | || ||| ||||||||||| || || ||||| |||| || | ||
Sbjct 369190 CGACAACCGCGTGCAGGAAATCACCGAGATCACCACCAGCCTGAAGGCGCTGGCGAAGGA 369249
Query 18176 GCTCGATATCGCCGTCGTTTTGCTGTCGCAGCTTAATCGAG-CAG-TCGAGAGCA-GAGA 18232
||| || | | || | ||| |||||||| ||| | ||| |||| ||| | ||
Sbjct 369250 GCTGAATGTTCCGATCATCGCGCTTTCGCAGCTC--TCGCGTCAGGTCGA-AGCGCGTGA 369306
Query 18233 GGATAAGCGACCTCTTCTCTCAGACCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCGA 18292
|| ||||| || | ||| | |||||||| || ||||| |||||||||||||||||||
Sbjct 369307 CGACAAGCGCCCGCAACTCGCCGACCTTCGTGAATCCGGCTCGATCGAGCAGGACGCCGA 369366
Query 18293 CATGATCGCGTTCTTGTTCCGTGAGGCCTACTACCT 18328
| || | |||| | ||||| |||| ||||||||
Sbjct 369367 CGTGGTGCTGTTCGTATTCCGCGAGGAGTACTACCT 369402
>seq811
Length=194255
Score = 93.3 bits (102), Expect = 1e-14
Identities = 70/81 (86%), Gaps = 10/81 (12%)
Strand=Plus/Plus
Query 6 CTGGGGGTCAAGGGGTCGTGGGTTCGAATCCCGCCGCTCCGACCA-TTTTCT-------- 56
||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 133978 CTGGGGGTCAAGGGGTCGTGGGTTCGAATCCCGCCGCTCCGACCATTTTTCTTCCCCAAA 134037
Query 57 CCTTTATTTTCA-ATGATCTT 76
|||||||||||| | ||||||
Sbjct 134038 CCTTTATTTTCATACGATCTT 134058
>seq1095
Length=1089284
Score = 89.7 bits (98), Expect = 2e-13
Identities = 149/212 (70%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 18120 AATCGGGTCAATGAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCTCGCCAGAGAGCTC 18179
||||| || | || || ||||||||||| || | ||||| |||| |||| || ||
Sbjct 360195 AATCGCGTGCAGGAAGTCACCGAGATCACCACCAACCTGAAGGCGCTGGCCAAGGAACTG 360136
Query 18180 GATATCGCCGTCGTTTTGCTGTCGCAGCTTAATCGAG-CAG-TCGAGAGCAGAGAGGATA 18237
| || | |||| ||||||||| | ||| | ||| |||||| | | || || |
Sbjct 360135 AACGTCCCGATCGTCGCGCTGTCGCAATTG--TCGCGTCAGGTCGAGAACCGCGACGACA 360078
Query 18238 AGCGACCTCTTCTCTCAGACCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCGACATGA 18297
|||| || | ||| | |||||||| || ||||| ||||||| |||||||||||| |
Sbjct 360077 AGCGCCCGCAACTCGCCGACCTTCGTGAATCCGGCTCGATCGAACAGGACGCCGACGTCG 360018
Query 18298 TCGCGTTCTTGTTCCGTGAGGCCTACTACCTC 18329
||| ||| | | || |||| ||||| |||
Sbjct 360017 TCGTCTTCGTCTATCGCGAGGAATACTATCTC 359986
>seq854
Length=160767
Score = 86.0 bits (94), Expect = 2e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209
||| || |||||||||||||||||| ||||||||||| ||||| ||||||| ||||
Sbjct 159183 CGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCACAGGTTCAAATC 159124
Query 21210 CTGTCTCCGCAACCA 21224
||||| |||||||||
Sbjct 159123 CTGTCCCCGCAACCA 159109
>seq249
Length=9465
Score = 82.4 bits (90), Expect = 2e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209
||| || |||||||||||||||||| ||||||||||| ||| ||||||||| ||||
Sbjct 3476 CGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAATC 3417
Query 21210 CTGTCTCCGCAACCA 21224
||| | |||||||||
Sbjct 3416 CTGCCCCCGCAACCA 3402
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 162521906956982
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |