Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_029066.1 Length=48666 Score E Sequences producing significant alignments: (Bits) Value seq1494 374 3e-99 seq724 95.1 4e-15 >seq1494 Length=1074632 Score = 374 bits (414), Expect = 3e-99 Identities = 681/986 (69%), Gaps = 37/986 (4%) Strand=Plus/Minus Query 30443 ATGGCCCTTTCTGATATGAAGGTATTCAACCAATACCTCAAAGCTGCAACTATCGAGACG 30502 ||| | || ||| | ||| |||| |||||| | ||| ||| | || || ||||||||| Sbjct 585707 ATGTCTCTCTCTCAGATGCAGGTCTTCAACAAGTACATCATGCCGGCGACCATCGAGACG 585648 Query 30503 CTGAACCAGGATGTCGAGAAGTTCAACGCCGCCTCGGCCGGCGCCATCCGCCTGACCACG 30562 ||| ||| || ||||||||||||| || ||| ||| || ||||| ||||||||| Sbjct 585647 CTGGCGCAGATGGTTCAGAAGTTCAACGCGGCGTCGAACGGAGCGATCCGTCTGACCACG 585588 Query 30563 CAGGGCATCGACGGCGACTTCCTGCAAGAATCCTTCTGGGCTGGCC-TGCATGGCGCCCA 30621 |||||| |||| ||||| ||| | || ||||| |||| | ||| | || || || Sbjct 585587 CAGGGCTTCGATGGCGATTTCTTCCAGGAATCGTTCTTT-CAGGCGATCCACTCGGCACA 585529 Query 30622 GCGTCGTGTCGATCGCTACGCCGCCAA--CGGCGCCCAGTCGGCAACCGCGCTCTCCCAG 30679 ||| || || ||||| ||||| ||||| || || | | | | |||| || || | Sbjct 585528 GCGCCGCGTTGATCGTTACGCGGCCAATTCGACGGC--GGCCCCGACCGACCTGACCGAA 585471 Query 30680 AAGCAGTACGACGCTGTCAAGGTGGCCGGTGGCTTTGGTCCGATCCTGTGGGAGCCCTCG 30739 || || ||| || ||| | || || ||||| |||||||||| | ||||| Sbjct 585470 CTCAAGCACTCCGCGGTGAAGATCGCGGGCGGCTTCGGTCCGATCCGTTACGAGCCTAGC 585411 Query 30740 CAGCTCTCCTGGATTCAGAAGAGCCCGGAAG---AGGCGCTGGAAGT--CATCAGCCGCA 30794 ||| | ||||| | ||| ||||| | ||| | ||||| | || ||||| Sbjct 585410 CAGATGACCTGGCTGCAGC---GCCCGACCGCTCAGGGCGTCGAAGTGGCTTC--CCGCA 585356 Query 30795 ACCTGTCCGAGGCAATCGTGGCGGATCAGCTGAACACCGTAATCGCCGCCCTGGTCGCTG 30854 || | | ||||| || |||| |||||||| || || | |||| ||| |||||| | | Sbjct 585355 ACTTTGCGGAGGCGATGCTGGCCGATCAGCTCAATACGGCAATCCTCGCTCTGGTCACGG 585296 Query 30855 CTATCAGCAACCAGGCCGCAGCGACCAACGACGTGTCGGCTAC---TGCCGGT------G 30905 | || ||||||| || | |||| || |||||||||| | | | ||| | | Sbjct 585295 CGATTTCCAACCAGTCCACCGCGAAGAATGACGTGTCGGGTGCCTCTCCCGATCCGACCG 585236 Query 30906 TTACCTATGCCGCCATCAACGCCGCGCACGCCAAGTTCGGCGACGCCTCCGGCCGCCTGG 30965 | ||||| | ||| ||||||| |||||||||||||||||| || || || | |||| | Sbjct 585235 TGACCTACGGCGCGATCAACGGCGCGCACGCCAAGTTCGGTGATGCGTCGGCAAGCCTCG 585176 Query 30966 TTGCGCAGGTAATGAACGGCGTGACCTTCCACGACCTCATCGGGAAGAACCTCACCAACG 31025 |||| ||||| ||| ||| |||| ||| ||| ||||| |||||||| ||||||| Sbjct 585175 TTGCTCAGGTCATGTCCGGTTCCACCTATCACCGCCTGATCGGTAAGAACCTGACCAACG 585116 Query 31026 CGCAGCAGCTGTTCCGTGCTGGCGACGTGACGATCGTCGATATCCTCGGCAAAGCCGTCA 31085 |||| |||||| || ||| || | ||||| ||||||||||| || ||||| Sbjct 585115 ATCAGCGCCTGTTCACGGCCGGCACGGTCAACATCGTGGATATCCTCGGAAAGGCCGTGG 585056 Query 31086 TCGTGACCGACTCCCCGGCGCTGTACTCGGCCGCGGTCGCCACTCCGGCTGCACCTGCCA 31145 | || ||||| | ||||| || | || | | ||||| | |||| | Sbjct 585055 TTGTCACCGATGCGCCGGCACTTTCGTCCTACAC-CTCGCC-------CAATACCT-ACG 585005 Query 31146 AGCAGCGCGTGCTGTCCCTGGCCGACGGCGCTGGCATGGTGATGGACGGTTCCGACCTGA 31205 || || || || || ||||| || ||||| | | |||| | ||||| ||| ||| Sbjct 585004 AGAAG---GTTCTCTCGCTGGCGGAGGGCGCGGCAACGGTGTTTGACGGCGGTGACGTGA 584948 Query 31206 TCACCAATATCGAGACCAGCAACGGTAAGGGCCGCATCGAGACGACCTTCCAGGCCGACT 31265 || |||| ||||||||| ||||| ||| |||||||||||| || | |||| |||| Sbjct 584947 TCTCCAACGTCGAGACCACGAACGGCAAGAACCGCATCGAGACCACGCTGCAGGTGGACT 584888 Query 31266 ATTCCTTCGGTCTGGCGTTGCGCGGCTATACCTGGGACACCGCCAACGGTGGCAAGTCTC 31325 | |||||||||| || | ||||| ||||||||| | |||||| |||||||| | Sbjct 584887 ACACCTTCGGTCTCTCGATCAAGGGCTACACCTGGGACGAAGGCAACGGCGGCAAGTCGC 584828 Query 31326 CGACCGACGCCGAGCTGGCCACCGGTTCCAACTGGGATCTGGTCGCCAACTCTATCAAGG 31385 | ||| || |||| || | ||||| || |||||||| ||| || | | |||||| Sbjct 584827 CCACCAACTCCGATCTCTCGACCGGCTCGAACTGGGACAAGGTTGCGACCAGCATCAAGA 584768 Query 31386 CTTCGGCCGGCGTCATCACCATCGGC 31411 | ||||||||||||||||||||| Sbjct 584767 ACACCGCCGGCGTCATCACCATCGGC 584742 >seq724 Length=279373 Score = 95.1 bits (104), Expect = 4e-15 Identities = 140/193 (73%), Gaps = 9/193 (5%) Strand=Plus/Plus Query 17144 GACGCAAAAGCCTGTCGCGCTGATGGAATACCTGATCCGCACCTACGCGGTACCG--GGC 17201 ||| |||||||| |||||||||||||| ||| |||||||||||| || | || | | Sbjct 197717 GACCCAAAAGCCGGTCGCGCTGATGGACTACTTGATCCGCACCTTTTCG--AACGAAGCC 197774 Query 17202 ATGACCGTTCTTGATAACACCATGGGCAGCGGCACCACTGGAGTTGCTGCGCTGCGCTGT 17261 || || || ||| ||||||||| |||||||| || || || || || |||| | Sbjct 197775 GACACGGTGCTGGATTGCACCATGGGGAGCGGCACGACGGGCGTCGCCGCCCTGCAAGCT 197834 Query 17262 GGCTGCGACTTCATCGGCATCGAGCTTGACCCGTCCCATTTT---GAAACCGCAAGCGCG 17318 ||| | ||||||||||||| ||| | | || || |||| ||| || | || || Sbjct 197835 GGCCGTCACTTCATCGGCATGGAG-ATCAGCCCTCGGTTTTTCGAGAACACGGAGGCTCG 197893 Query 17319 -CGCATCGACGAA 17330 |||||||||||| Sbjct 197894 TCGCATCGACGAA 197906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155606830051864