Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_029073.1 Length=141298 Score E Sequences producing significant alignments: (Bits) Value seq592 251 6e-62 >seq592 Length=6384 Score = 251 bits (278), Expect = 6e-62 Identities = 450/650 (69%), Gaps = 8/650 (1%) Strand=Plus/Minus Query 48714 AATAGCCTCTTTGACTTCATTTGCATTTCCCACTTCATATCCTAATGGCTGATTCATATC 48773 |||| | |||| | ||| |||||| || | | | |||||| |||| ||||||||| Sbjct 2785 AATAACTTCTTGTAATTCTAGTGCATTACCAATTGTTTGTCCTAAAGGCTTATTCATATC 2726 Query 48774 TGTAATGACTGCA--ATTGTTTTTCGATTCAGATTTTTTCCAATATCAACCATTTCTTGT 48831 |||| | ||| ||| ||||| ||| | | ||| ||||||| |||||| || | Sbjct 2725 ACTAATAATAGCATAATTTTTTTT--ATTAAAAGCTTTACCAATATGTACCATTAATTTT 2668 Query 48832 GCTAATGCTTTAG-AGTCTTCTAATGTTTTCATAAATGCTCCATTTCCTGTTTTAACATC 48890 ||||| | | | ||| | ||| | | ||| || || ||||| ||||| || Sbjct 2667 GCTAACTTTCTTGCAGT-TACTATATCCTGAACAAAGGCACCTTTTCCACATTTAATGTC 2609 Query 48891 TAATACAATTGCATCTGCTCCCATTGCGAtttttttACTCATAATGCTACTAGCAATTAA 48950 || || |||| ||| || ||||| || ||||||||| ||||| ||| ||||||||| Sbjct 2608 TAGTAAAATTAAATCAGCACCCATCGCTATTTTTTTAGACATAACACTAGCAGCAATTAA 2549 Query 48951 TGGAATTGAATTAACTGTTCCAGTAACATCGCGTAATGCATATAATTTTTTGTCGGCAGG 49010 ||| | ||||| ||||||||| | |||||| |||||||||||||||||||| || ||||| Sbjct 2548 TGGTAATGAATCAACTGTTCCTGAAACATCACGTAATGCATATAATTTTTTATCAGCAGG 2489 Query 49011 CACTAAAATTCCACTTTGTCCAACTAATGC-GATTTTATGTGTATTAACTTGATTAATAA 49069 ||||||| | | | |||| | || |||| | || | | ||||||| ||||||| Sbjct 2488 CACTAAATTACTAGTTTGACTAA-TAATACTCATACCAACTTTATTAACAACTTTAATAA 2430 Query 49070 ATTGTTCTCTTGTTAATTCTACGTTAAAGCCTTGTATAGATTCTAATTTGTCAATTGTTC 49129 | | | | ||| || || ||||| | | || ||| ||||| ||||| || | Sbjct 2429 AATCTGATATTGCCAAATCACATTTAAAATTTGGAATTATTTCCAATTTATCAATAGTAC 2370 Query 49130 CTCCTGTGTGCCCTAAACCTCTACCTGACATTTTAGCAACAGGAATACCCAAAGAAGCAA 49189 | || || || || ||||| || || ||||| ||||| | || ||| |||| Sbjct 2369 CACCAGTAATACCCAATCCTCTTCCAGAAATTTTTGCAACCTTTAATCCACAAGCAGCAG 2310 Query 49190 CCAATGGAGCAACGATTAAACTAATTTTATCGCCGACTCCACCTGTGGAATGTTTATCTA 49249 | |||||| ||| | ||||||| ||||||| || || ||||| || ||||||||||| | Sbjct 2309 CTAATGGACCAAATACTAAACTAGTTTTATCACCAACACCACCAGTTGAATGTTTATCAA 2250 Query 49250 CTTTTACACCTTCGATTTTTGATAGGTCAATTGTTTCACCAGAATTAATCATGGCATTAG 49309 | | ||| |||| ||||| || || ||||||||| |||||| | || || | Sbjct 2249 TACTAAAACCAGTAATTTGTGATAAATCCATGGTTTCACCACTATTAATAACGGTTTTTG 2190 Query 49310 TTAAGGCAGAGATTTCTTCTTTAGACATGCCATTGAAATAAATTGCCATT 49359 | | | | ||| || |||| ||| || | ||||||| |||||| Sbjct 2189 TATATTCTACTAATTCATCATTAGTCATTCCCTGAAAATAAACAGCCATT 2140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452017130170320