Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq743 105 6e-18 seq890 91.5 1e-13 seq1482 86.0 6e-12 >seq743 Length=263205 Score = 105 bits (116), Expect = 6e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 || || |||||||| ||| ||||| || || || |||||||||||||| || | Sbjct 72969 ACCTGTGCGATCATCATCGTCAGCAGCGCATAGGACGCGATGTTGAACGGCACGCCGAGA 73028 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 || ||| |||| || |||||||||||||| || || | || |||||||||||||| Sbjct 73029 AACACGTCGGCCGAACGCTGATAGAGCTGGCACGAGAGTTTGCCGTTCGCGACGTAGAAC 73088 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796 ||| | ||| ||||| || || |||||||| || || ||| ||| ||||| ||| Sbjct 73089 TGGAACAGGCAATGGCATGGCGGCAGCGCCATGTGATCGACATCGGCCGGATTCCATGCG 73148 Query 6797 C 6797 | Sbjct 73149 C 73149 Score = 105 bits (116), Expect = 6e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 34548 GCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCC 34607 |||| ||||| ||| ||| || || |||||||| || || ||||| ||| | || Sbjct 73149 GCGCATGGAATCCGGCCGATGTCGATCACATGGCGCTGCCGCCATGCCATTGCCTGTTCC 73090 Query 34608 AATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGG 34667 | |||||||||||||| || | || || |||||||||||||| || |||| ||| || Sbjct 73089 AGTTCTACGTCGCGAACGGCAAACTCTCGTGCCAGCTCTATCAGCGTTCGGCCGACGTGT 73030 Query 34668 GGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATG 34727 | || |||||||||||||| || || || ||||| ||| |||||||| || | Sbjct 73029 TTCTCGGCGTGCCGTTCAACATCGCGTCCTATGCGCTGCTGACGATGATGATCGCACAGG 72970 Query 34728 T 34728 | Sbjct 72969 T 72969 >seq890 Length=125401 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 |||||||| || | || || || || || ||||| || | ||| || || ||| ||| Sbjct 47144 TGGTTCAGATACAGGTGGGCGTCGCCGAAGGTATGGACGAACTCGCCCGGCTCCAGACCC 47203 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673 ||||| || || | ||| || ||||| ||||| || |||||||||||||| || Sbjct 47204 ACGACCTGGGCCACCATCAGGGTCAGCAGGGCGTAGGAGGCGATGTTGAACGGCACGCCC 47263 Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAG 6733 | ||||| | || ||||| ||||||||| || | || | |||||| || Sbjct 47264 AGGAAGATGTCGGCGCTACGCTGATACAGCTGGCAGCTGAGTTTTCCGTCTGCGACGAAG 47323 Query 6734 AATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCAT 6768 || ||| | ||| ||||||||| || || ||||| Sbjct 47324 AACTGGAACAGGCAGTGGCACGGCGGCAGGGCCAT 47358 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCC 34636 ||||| || || ||||||||| ||| | ||| |||| |||||| | || | || | Sbjct 47358 ATGGCCCTGCCGCCGTGCCACTGCCTGTTCCAGTTCTTCGTCGCAGACGGAAAACTCAGC 47299 Query 34637 TGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGT 34696 |||||||| ||||| || | ||||| | || |||||||||||||| || Sbjct 47298 TGCCAGCTGTATCAGCGTAGCGCCGACATCTTCCTGGGCGTGCCGTTCAACATCGCCTCC 47239 Query 34697 TACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTG 34756 ||||| ||||| || ||| | || || |||||||| ||| || || ||| | || Sbjct 47238 TACGCCCTGCTGACCCTGATGGTGGCCCAGGTCGTGGGTCTGGAGCCGGGCGAGTTCGTC 47179 Query 34757 CATACGTTGGGGGATGCGCATATCTACCTGAACCA 34791 ||||| || || || || || | || |||||||| Sbjct 47178 CATACCTTCGGCGACGCCCACCTGTATCTGAACCA 47144 >seq1482 Length=483770 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTC 34635 ||||||||| ||||||||||| ||| | || ||||| ||||| || || | ||||| Sbjct 421797 GATGGCGCTGCCCCCGTGCCATTGCCTGTTTCAGTTCTATGTCGCCAACGGCAAACTGTC 421856 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 |||||||||||||| || || | || | | || |||||||||||||| || Sbjct 421857 GTGCCAGCTCTATCAGCGCTCCGCTGATGTCTTCCTCGGCGTGCCGTTCAACATCGCATC 421916 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGT 34755 || || ||||| ||| ||| |||| || ||| || ||| | || || | | Sbjct 421917 CTATGCGCTGCTGACGATGATGGTCGCACAGGTCACCGGCTTGAAAGCGGGCGAATTCAT 421976 Query 34756 GCATACGTTGGGGGATGCGCAT 34777 || ||| |||| || |||||| Sbjct 421977 TCACACGCTGGGTGACGCGCAT 421998 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 6568 ATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGAT 6627 |||||| || |||| ||| || | | || || | ||| || ||| || |||| Sbjct 421998 ATGCGCGTCACCCAGCGTGTGAATGAATTCGCCCGCTTTCAAGCCGGTGACCTGTGCGAC 421939 Query 6628 CATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCC 6687 ||| ||| ||||| || || || |||||||||||||| || | | || | Sbjct 421938 CATCATCGTCAGCAGCGCATAGGATGCGATGTTGAACGGCACGCCGAGGAAGACATCAGC 421879 Query 6688 CGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGT 6747 || || |||||||||||||| ||||| | || || ||||| ||||| || | ||| Sbjct 421878 GGAGCGCTGATAGAGCTGGCACGACAGTTTGCCGTTGGCGACATAGAACTGAAACAGGCA 421819 Query 6748 GTGGCACGGGGGGAGCGCCATC 6769 ||||||||||| ||||||||| Sbjct 421818 ATGGCACGGGGGCAGCGCCATC 421797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448254000683280