Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq743 105 6e-18
seq890 91.5 1e-13
seq1482 86.0 6e-12
>seq743
Length=263205
Score = 105 bits (116), Expect = 6e-18
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676
|| || |||||||| ||| ||||| || || || |||||||||||||| || |
Sbjct 72969 ACCTGTGCGATCATCATCGTCAGCAGCGCATAGGACGCGATGTTGAACGGCACGCCGAGA 73028
Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736
|| ||| |||| || |||||||||||||| || || | || ||||||||||||||
Sbjct 73029 AACACGTCGGCCGAACGCTGATAGAGCTGGCACGAGAGTTTGCCGTTCGCGACGTAGAAC 73088
Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796
||| | ||| ||||| || || |||||||| || || ||| ||| ||||| |||
Sbjct 73089 TGGAACAGGCAATGGCATGGCGGCAGCGCCATGTGATCGACATCGGCCGGATTCCATGCG 73148
Query 6797 C 6797
|
Sbjct 73149 C 73149
Score = 105 bits (116), Expect = 6e-18
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 34548 GCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCC 34607
|||| ||||| ||| ||| || || |||||||| || || ||||| ||| | ||
Sbjct 73149 GCGCATGGAATCCGGCCGATGTCGATCACATGGCGCTGCCGCCATGCCATTGCCTGTTCC 73090
Query 34608 AATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGG 34667
| |||||||||||||| || | || || |||||||||||||| || |||| ||| ||
Sbjct 73089 AGTTCTACGTCGCGAACGGCAAACTCTCGTGCCAGCTCTATCAGCGTTCGGCCGACGTGT 73030
Query 34668 GGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATG 34727
| || |||||||||||||| || || || ||||| ||| |||||||| || |
Sbjct 73029 TTCTCGGCGTGCCGTTCAACATCGCGTCCTATGCGCTGCTGACGATGATGATCGCACAGG 72970
Query 34728 T 34728
|
Sbjct 72969 T 72969
>seq890
Length=125401
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613
|||||||| || | || || || || || ||||| || | ||| || || ||| |||
Sbjct 47144 TGGTTCAGATACAGGTGGGCGTCGCCGAAGGTATGGACGAACTCGCCCGGCTCCAGACCC 47203
Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673
||||| || || | ||| || ||||| ||||| || |||||||||||||| ||
Sbjct 47204 ACGACCTGGGCCACCATCAGGGTCAGCAGGGCGTAGGAGGCGATGTTGAACGGCACGCCC 47263
Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAG 6733
| ||||| | || ||||| ||||||||| || | || | |||||| ||
Sbjct 47264 AGGAAGATGTCGGCGCTACGCTGATACAGCTGGCAGCTGAGTTTTCCGTCTGCGACGAAG 47323
Query 6734 AATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCAT 6768
|| ||| | ||| ||||||||| || || |||||
Sbjct 47324 AACTGGAACAGGCAGTGGCACGGCGGCAGGGCCAT 47358
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCC 34636
||||| || || ||||||||| ||| | ||| |||| |||||| | || | || |
Sbjct 47358 ATGGCCCTGCCGCCGTGCCACTGCCTGTTCCAGTTCTTCGTCGCAGACGGAAAACTCAGC 47299
Query 34637 TGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGT 34696
|||||||| ||||| || | ||||| | || |||||||||||||| ||
Sbjct 47298 TGCCAGCTGTATCAGCGTAGCGCCGACATCTTCCTGGGCGTGCCGTTCAACATCGCCTCC 47239
Query 34697 TACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTG 34756
||||| ||||| || ||| | || || |||||||| ||| || || ||| | ||
Sbjct 47238 TACGCCCTGCTGACCCTGATGGTGGCCCAGGTCGTGGGTCTGGAGCCGGGCGAGTTCGTC 47179
Query 34757 CATACGTTGGGGGATGCGCATATCTACCTGAACCA 34791
||||| || || || || || | || ||||||||
Sbjct 47178 CATACCTTCGGCGACGCCCACCTGTATCTGAACCA 47144
>seq1482
Length=483770
Score = 86.0 bits (94), Expect = 6e-12
Identities = 140/202 (69%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTC 34635
||||||||| ||||||||||| ||| | || ||||| ||||| || || | |||||
Sbjct 421797 GATGGCGCTGCCCCCGTGCCATTGCCTGTTTCAGTTCTATGTCGCCAACGGCAAACTGTC 421856
Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695
|||||||||||||| || || | || | | || |||||||||||||| ||
Sbjct 421857 GTGCCAGCTCTATCAGCGCTCCGCTGATGTCTTCCTCGGCGTGCCGTTCAACATCGCATC 421916
Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGT 34755
|| || ||||| ||| ||| |||| || ||| || ||| | || || | |
Sbjct 421917 CTATGCGCTGCTGACGATGATGGTCGCACAGGTCACCGGCTTGAAAGCGGGCGAATTCAT 421976
Query 34756 GCATACGTTGGGGGATGCGCAT 34777
|| ||| |||| || ||||||
Sbjct 421977 TCACACGCTGGGTGACGCGCAT 421998
Score = 86.0 bits (94), Expect = 6e-12
Identities = 140/202 (69%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 6568 ATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGAT 6627
|||||| || |||| ||| || | | || || | ||| || ||| || ||||
Sbjct 421998 ATGCGCGTCACCCAGCGTGTGAATGAATTCGCCCGCTTTCAAGCCGGTGACCTGTGCGAC 421939
Query 6628 CATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCC 6687
||| ||| ||||| || || || |||||||||||||| || | | || |
Sbjct 421938 CATCATCGTCAGCAGCGCATAGGATGCGATGTTGAACGGCACGCCGAGGAAGACATCAGC 421879
Query 6688 CGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGT 6747
|| || |||||||||||||| ||||| | || || ||||| ||||| || | |||
Sbjct 421878 GGAGCGCTGATAGAGCTGGCACGACAGTTTGCCGTTGGCGACATAGAACTGAAACAGGCA 421819
Query 6748 GTGGCACGGGGGGAGCGCCATC 6769
||||||||||| |||||||||
Sbjct 421818 ATGGCACGGGGGCAGCGCCATC 421797
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448254000683280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |