Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1212 114 3e-20 seq249 113 1e-19 seq107 113 1e-19 seq812 105 2e-17 seq966 100 7e-16 seq917 98.7 2e-15 seq1376 91.5 4e-13 seq20 89.7 1e-12 >seq1212 Length=36954 Score = 114 bits (126), Expect = 3e-20 Identities = 106/132 (80%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| || || ||||| ||| ||||||||||||| ||||||||||| | | Sbjct 1896 TGGTAAGGTTTTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCC 1837 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTT-ACGC 7854 |||||| || ||||||||||||| |||||| |||||| | |||| ||||| ||| |||| Sbjct 1836 CCGTCAATTCCTTTGAGTTTTAATCTTGCGACCGTAGTCCCCAGGCGGAATGTTTAACGC 1777 Query 7855 GTTAGCT-TAAT 7865 ||||||| |||| Sbjct 1776 GTTAGCTGTAAT 1765 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/100 (83%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| ||| ||||| | |||| ||| | || ||| | ||||| Sbjct 1234 TGAGAGGATGATCAGCCACACTGGAACTGAGATACGGTCCA-GACTCCTACGGGAGGCAG 1292 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 |||||| ||||||| |||||||||||||||| ||||| || Sbjct 1293 CAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAG 1332 >seq249 Length=9465 Score = 113 bits (124), Expect = 1e-19 Identities = 109/139 (78%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783 ||| || |||| ||||||| |||| ||||| || ||||||||||||| ||||||||| Sbjct 7956 TATGTCAAGGGCTGGTAAGGTTCTGCGCGTTGCTTCGAATTAAACCACATGCTCCACCGC 8015 Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 || | | | |||||| || ||||||||||||| |||||| |||| | | |||| || Sbjct 8016 TTGTGCGGGCCCCCGTCAATTCCTTTGAGTTTTAATCTTGCGACCGTACTCCCCAGGCGG 8075 Query 7844 AATATTT-ACGCGTTAGCT 7861 ||| ||| | ||||||||| Sbjct 8076 AATGTTTAATGCGTTAGCT 8094 Score = 98.7 bits (108), Expect = 2e-15 Identities = 92/113 (81%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 8632 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 8574 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGA 6878 |||||| ||||||| ||||||||||| |||| ||||| || ||| ||||| Sbjct 8573 CAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTGA 8521 Score = 89.7 bits (98), Expect = 1e-12 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 372624 GGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGT 372683 |||| ||||| || ||||||||||||||||| ||||||||||| ||| || |||| | Sbjct 4974 GGTGGCACAGACCAGGGGGTAGCGACTGTTTACCAAAAACACAGGGCTCTGCGAAGTCGC 4915 Query 372684 AAAACGATGTATAGGGTCTGAC 372705 || |||| |||||||||||||| Sbjct 4914 AAGACGACGTATAGGGTCTGAC 4893 >seq107 Length=12117 Score = 113 bits (124), Expect = 1e-19 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||||||||||||||| || |||||||| ||||| ||||| ||||||| |||||| Sbjct 4949 AAAATTTGACCATCAGTAATTGAAATAACATTAGTAGGAATATATGCAGAAATATCACCG 4890 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATTT 4587 ||||||||||| | || ||||||||| || | ||||||||| |||| |||| Sbjct 4889 GCTTGTGTTTCAATAATAGGTAAGGCAGTAATACTCCCACCACCATGTTTTTCATTT 4833 >seq812 Length=1388629 Score = 105 bits (116), Expect = 2e-17 Identities = 84/97 (87%), Gaps = 3/97 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||||||||||||| | ||||||||| || ||| | ||||| Sbjct 96 TGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAAA-CTCCTACGGGAGGCAG 38 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATC 6862 |||||| ||||||| |||||||||||||||| ||||| Sbjct 37 CAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATC 1 >seq966 Length=90452 Score = 100 bits (110), Expect = 7e-16 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| |||| ||||| || ||||||||||||| ||||||||||| | | | Sbjct 89438 TGGTAAGGTTCTGCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 89379 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGC 7854 |||||| || ||||||||||||| |||||| |||| | | |||| ||||| || | || Sbjct 89378 CCGTCAATTCCTTTGAGTTTTAATCTTGCGACCGTACTCCCCAGGCGGAATGCTTAAAGC 89319 Query 7855 GTTAGCT 7861 ||||||| Sbjct 89318 GTTAGCT 89312 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/95 (83%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||||||||||||| | ||||||||| || ||| | ||||| Sbjct 88774 TGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAA-ACTCCTACGGGAGGCAG 88832 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGA 6860 |||||| |||| || |||||||||||||| ||| Sbjct 88833 CAGTGGGGAATCTTGCGCAATGGGCGAAAGCCTGA 88867 >seq917 Length=2224 Score = 98.7 bits (108), Expect = 2e-15 Identities = 92/113 (81%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAA-AGGGCAG 6825 |||||| |||| | |||||||||||||||| | ||||||||| |||||| | ||||| Sbjct 2032 TGAGAGGATGAACGGCCACATTGGGACTGAGACACGGCCCAAA-CTTCTACGGAAGGCAG 1974 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGA 6878 |||| | |||| ||| ||||||||||||||| |||| ||| |||| ||||| Sbjct 1973 CAGTAGGGAATTTTTCACAATGGGCGAAAGCCTGATGGAGCAATGCCGCGTGA 1921 Score = 91.5 bits (100), Expect = 4e-13 Identities = 97/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| || || ||||| || ||||||||||||| ||||||||||| | | Sbjct 1349 TGGTAAGGTTTTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCC 1408 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| | || |||||||| ||| || || | || Sbjct 1409 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCATACTACTCAGGCGGAGTACTTAATGC 1468 Query 7855 GTTAGCT 7861 ||||||| Sbjct 1469 GTTAGCT 1475 >seq1376 Length=19117 Score = 91.5 bits (100), Expect = 4e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 7545 TAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTT 7604 |||| ||| || || ||||| || ||||| | |||||| | | ||| | || ||| | Sbjct 7943 TAATTACCAGCTATATAACGTAATGATTACAGGGCATGCGGTAATAATGGTGTTTTTTAT 7884 Query 7605 TGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGC 7664 | ||||| | | || || || || || ||||| ||||| ||| | ||||||||||| Sbjct 7883 GATAATGCCAGCCTTAATGGGAGGATTTGGTAATTGGTTCGTACCTCTCATGATTGGTGC 7824 Query 7665 TCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATT 7709 || |||||||| ||||| | | || ||| |||||||||| || Sbjct 7823 ACCAGATATGGCATTTCCTCGTATGAATAATTTAAGTTTTTGGTT 7779 >seq20 Length=12842 Score = 89.7 bits (98), Expect = 1e-12 Identities = 86/109 (79%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 372598 TAAGCTGCTATAAG-CAATTACTTATAGGTGTAACAGAATAGAGGGTAGCGACTGTTTAC 372656 ||| ||||| | || ||| || |||||| ||| ||||| | ||||||||||||||| Sbjct 11086 TAACCTGCTTTTAGGCAACTATGAGTAGGTGGCACAAAATAGGGAGTAGCGACTGTTTAC 11145 Query 372657 TAAAAACACAGGACTCCGCTAAGTTGTAAAACGATGTATAGGGTCTGAC 372705 |||||||||||||||| || || |||| || |||||||||||||| Sbjct 11146 TAAAAACACAGGACTCTGCAAACACGTAAGTGGAAGTATAGGGTCTGAC 11194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192508296320306