Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_030931.1
Length=41871
Score E
Sequences producing significant alignments: (Bits) Value
seq97 158 3e-34
seq743 125 2e-24
>seq97
Length=479585
Score = 158 bits (174), Expect = 3e-34
Identities = 342/505 (68%), Gaps = 20/505 (4%)
Strand=Plus/Minus
Query 27154 TATGTCGAAGAGCAGGAGATCCTGTTCGGCGATGGCACCGGCGCGCACCTCGACGGCATC 27213
|||||||||||| | || | || ||||||||||||||| | |||| |||||||
Sbjct 247635 TATGTCGAAGAGAACCAGCTTCTCAATGGCGATGGCACCGGCCAGAACCTGCTCGGCATC 247576
Query 27214 GTGCCGCAAGCCTCTGCGTT--CAGCGCCGCCTT-CGCGGTCGAGCAG--CA----GAAC 27264
| ||||| || | || || ||| ||| || | || | || || || |
Sbjct 247575 ATCCCGCAGGCAACGGCCTTTGCAGTCCCGGCTGGCACGACCATGCCCGCCACTGTGACC 247516
Query 27265 GGTATCGATGACCTGCGCCTGGCGATGCTGCAGGCCCAGCTGGCGCGCCTGCCGGCATCC 27324
||||| || ||| || |||||||||| |||||| ||||| |||||| |
Sbjct 247515 GGTATTGACCGCCTTCGTGTGGCGATGCTTCAGGCCGCTCTGGCTGAATATCCGGCAACG 247456
Query 27325 GGCCACGTTCTGCACTTCATCGACTGGGCGAAGATCGAGCTGACCAAGGACACCCTGGGC 27384
|| ||||| || | || |||||| | |||||| || |||||||||| ||||
Sbjct 247455 GGTCACGTCCTCAGCCCGATTGACTGGACTTCGATCGAACTCCTGAAGGACACCCAGGGC 247396
Query 27385 CGCTACATCCTCGCCAACCCGCTGGGCCTGGCCGGCCCGCTGCTGTGGGGCCTGCCGGTG 27444
|| |||||| ||| |||||||| ||| | | ||| || ||||| ||||||||
Sbjct 247395 CGTTACATCATCGGCAACCCGCAGGGAACGATTGCTCCGACCCTCTGGGGTCTGCCGGTT 247336
Query 27445 GTTGCCACTGAA---ATCGCCGCGTTCCAGGGCAAGTTCCTGACTGGTGCGTTCCAGACC 27501
|| | || | || ||||| ||||||||||| || ||||| ||| ||
Sbjct 247335 GTCACGACCCAGGCCATGGCCGCA------GGCAAGTTCCTCACCGGTGCATTCAAGCTG 247282
Query 27502 GGCGCGCAGATCTTCGATCGCGAAGACGCCAACGTGGTGATCTCCACCGAGAACGCCGAC 27561
|| |||||||| ||||| ||| | || ||| | || | |||||||||| |||
Sbjct 247281 GGTGCGCAGATTTTCGACCGCTGGCAGGCTCGCGTCGAAGTCGCAACCGAGAACGAAGAC 247222
Query 27562 GACTTCGAGAAGAACATGATCTCGATCCGTTGC-GAAGAGCGCCTGGCGCTGGCCGTGAA 27620
|||||| |||||| | || | |||| | || |||||||| || || |||||||| |
Sbjct 247221 GACTTCATCAAGAACCTCGTCACCATCC-TCGCAGAAGAGCGTCTTGCTCTGGCCGTCTA 247163
Query 27621 GCGCCCCGAGGCGTTCATCTACGGC 27645
|| || || |||||||||||||||
Sbjct 247162 TCGTCCAGAAGCGTTCATCTACGGC 247138
>seq743
Length=263205
Score = 125 bits (138), Expect = 2e-24
Identities = 341/514 (66%), Gaps = 21/514 (4%)
Strand=Plus/Minus
Query 27141 CTTCGGCCTGAAGTATGTCGAAGAGCAGGAGATCCTGTTCGGCGATGGCACCGGCGCGCA 27200
|| ||||||||||| || || || || | ||| |||| | ||||| || | |
Sbjct 16062 CTACGGCCTGAAGTTCGTTGAGGAAACTCAGCTTCTGACCGGCAACGGCACTGGTCAGAA 16003
Query 27201 CCTCGACGGCATCGTGCCGCAAGCCTCTGCGTTCAGCGCCGCCTT----CGCGGTCGAGC 27256
||| |||| || |||||||| || ||||| || |||||| | | ||||| ||
Sbjct 16002 CCTGAACGGTATTGTGCCGCAGGCTTCTGC-TTATGCGCCGTCATTCAACGCGGCTGACG 15944
Query 27257 AGCAGAACGGTATCGATGACCTGCGCCTGGCGATGCTGCAGGCCCAGCTGGCGCGCCTGC 27316
| ||| | ||||||| ||| ||||| || || |||||| |||||| |
Sbjct 15943 AACAG---GCTATCGATCGCCTTCGCCTCGCCCTGTTGCAGGTTATCCTGGCGAATTATC 15887
Query 27317 CGGCATCCGGCCACGTTCTGCACTTCATCGACTGGGCGAAGATCGAGCTGACCAAGGACA 27376
|||| || | |||||| || | || ||||| || || ||||||||||| |
Sbjct 15886 CGGCGTCGGCTTTCGTTCTCAACCCGGTTGATTGGGCACGCATTGAACTGACCAAGGATA 15827
Query 27377 CCCTGGGCCGCTACATCCTCGCCAAC-CCGCTGGGCCTGGCCGGCCCGCTGCTGTGGGGC 27435
| | ||| ||||| ||| | | |||| |||| || | |||||| ||| |||
Sbjct 15826 CTCAGGGTCGCTATATCGTTGGCAACGCCGCGTCTCC-GATTGGCCCGTCGCTCTGGAAT 15768
Query 27436 CTGCCGGTGGTTGCCACTGAAATCGCCG-CGTTC-CAG--GGCAAGTTCCTGACTGGTGC 27491
|| |||||||| | | |||| | || | | | ||| |||||||||| || ||
Sbjct 15767 CTCCCGGTGGTGG-------AGTCGCAGGCGATGACCGCCGGCGAGTTCCTGACGGGCGC 15715
Query 27492 GTTCCAGACCGGCGCGCAGATCTTCGATCGCGAAGACGCCAACGTGGTGATCTCCACCGA 27551
|||| | ||| |||||| | ||||||||| | | | || | | || |||||
Sbjct 15714 GTTCAATCTCGGTGCGCAGGTATTCGATCGCATGGGTGTTGAGGTTCTTCTGTCGACCGA 15655
Query 27552 GAACGCCGACGACTTCGAGAAGAACATGATCTCGATCCGTTGCGAAGAGCGCCTGGCGCT 27611
||| | |||||||| |||||||||||| | | ||||| ||||||||| | || |
Sbjct 15654 AAACTCGGACGACTTTGAGAAGAACATGTGCACCATCCGAGTGGAAGAGCGCATTGCCTT 15595
Query 27612 GGCCGTGAAGCGCCCCGAGGCGTTCATCTACGGC 27645
||| ||| | ||||||||| ||| | ||||||
Sbjct 15594 GGCGGTGTATCGCCCCGAGAGCTTCGTTTACGGC 15561
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 133863217108654
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |