Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq890 134 2e-26 seq1482 120 5e-22 seq827 93.3 7e-14 seq743 91.5 2e-13 seq910 86.0 1e-11 seq998 84.2 3e-11 >seq890 Length=125401 Score = 134 bits (148), Expect = 2e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608 ||||| |||||||||||||| | | | ||||| |||||| || ||||| ||| || Sbjct 47721 GACCGCACCGGCACCGGCACCCTGGGCGTCTTCGGTCGCCAGATTCGCTTTGATCTGGCC 47662 Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668 | |||||||| | ||||||| || ||| | ||||| ||||| ||||| ||| ||| Sbjct 47661 AAGGGCTTCCCCGTCCTGACCACCAAGAAGCTGCACCTGCGTTCGATCATCATCGAACTG 47602 Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATC 202728 |||||||||||| || || ||||||||| | | || || || ||||| ||| ||| Sbjct 47601 CTGTGGTTCCTGCGCGGCGAGACCAACATCGGCTGGCTCAAGGAGAACGGCGTCCGCATC 47542 Query 202729 TGGGACGAATGGGC 202742 ||||| |||||||| Sbjct 47541 TGGGATGAATGGGC 47528 Score = 96.9 bits (106), Expect = 5e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 203296 TGTCAGTTGTATCAGCGCAGCGCCGATGTCTTCTTAGGCGTGCCGTTTAACATCGCCTCG 203355 || ||| |||||||||| |||||||| ||||| | ||||||||||| ||||||||||| Sbjct 47298 TGCCAGCTGTATCAGCGTAGCGCCGACATCTTCCTGGGCGTGCCGTTCAACATCGCCTCC 47239 Query 203356 TATGCTTTACTGACTGAGATGGTTGCTCAGCAGGTCAACATGGTGGCCGAGGAGTTCGTC 203415 || || | ||||| |||||| || ||| || ||| | | | ||||||||| Sbjct 47238 TACGCCCTGCTGACCCTGATGGTGGCCCAGGTCGTGGGTCTGGAGCCGGGCGAGTTCGTC 47179 Query 203416 TGGACAGGCGGTGATACACATCTGTATTCCAACCATCTGGAGCAGGCCCGTCTGCAGTTA 203475 || ||| || | || |||||| ||||||||||| |||||| || ||| | Sbjct 47178 CATACCTTCGGCGACGCCCACCTGTATCTGAACCATCTGGAACAGGCCGAACTTCAGCTG 47119 Query 203476 ACTCGTGACCC 203486 || || || || Sbjct 47118 ACGCGCGAGCC 47108 >seq1482 Length=483770 Score = 120 bits (132), Expect = 5e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 202540 GAAAAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTT 202599 || ||| | ||||| ||||||||||| |||| || ||||||| |||| ||| Sbjct 421426 GAGAAGCACGACCGCACCGGCACCGGAACGCTGTCGGTGTTCGGCCATCAGACGCGCCAC 421485 Query 202600 GACCTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATT 202659 | || ||| ||| ||||| ||| | || ||||| ||| | |||| || ||| | Sbjct 421486 AATTTGGCCGCAGGATTCCCGCTGCTCACGACGAAGAAGCTATCCCTCAAATCGATCGTC 421545 Query 202660 CACGAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGG 202719 || |||||||| ||||| ||||| || ||||||||||||| ||||| || || |||| Sbjct 421546 CATGAGCTGCTCTGGTTTCTGAAGGGCGACACCAACATCAAGTACCTCAAGGACCACGGC 421605 Query 202720 GTCACTATCTGGGACGAATGGGCG 202743 ||| | |||||||| || |||||| Sbjct 421606 GTCTCGATCTGGGATGAGTGGGCG 421629 Score = 104 bits (114), Expect = 4e-17 Identities = 154/215 (72%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 203290 CTATCGTGTCAGTTGTATCAGCGCAGCGCCGATGTCTTCTTAGGCGTGCCGTTTAACATC 203349 || ||||| ||| | ||||||||| ||| ||||||||| | ||||||||||| |||||| Sbjct 421852 CTGTCGTGCCAGCTCTATCAGCGCTCCGCTGATGTCTTCCTCGGCGTGCCGTTCAACATC 421911 Query 203350 GCCTCGTATGCTTTACTGACTGAGATGGTTGCTCAGCAGGTCA---ACATGGTGGCCGAG 203406 || || ||||| | ||||| |||||| || ||||||| | || || | Sbjct 421912 GCATCCTATGCGCTGCTGACGATGATGGTCGC---ACAGGTCACCGGCTTGAAAGCGGGC 421968 Query 203407 GAGTTCGTCTGGACAGGC--GGTGATACACATCTGTATTCCAACCATCTGGAGCAGGCCC 203464 || ||| | ||| || ||||| | ||||| |||||||| |||||||| ||||| | Sbjct 421969 GAATTC--ATTCACACGCTGGGTGACGCGCATCTTTATTCCAATCATCTGGAACAGGCGC 422026 Query 203465 GTCTGCAGTTAACTCGTGACCCGCACCCATTACCG 203499 | |||| || || || | |||| | |||| ||| Sbjct 422027 GATTGCAATTGACGCGCGCGCCGCGCGCATTGCCG 422061 >seq827 Length=173386 Score = 93.3 bits (102), Expect = 7e-14 Identities = 81/98 (83%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769 |||||||||| ||||||||||||| ||||||||| |||||||||||||||||| |||| Sbjct 17879 TGTAGCTCAGTTGGTTAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 17820 Query 2770 TCAGTCCTGCCA-TATCTGGAG-AATTGGATGAGTGGC 2805 ||| || |||| | ||| || ||| | | ||||||| Sbjct 17819 TCACTCGCGCCACTCTCTCTAGAAATAGAAAGAGTGGC 17782 Score = 89.7 bits (98), Expect = 8e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769 |||||||||| ||||||||||||| ||||||||| |||||||||||||||||| |||| Sbjct 17721 TGTAGCTCAGTTGGTTAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 17662 Query 2770 TCAGTCCTGCCA 2781 ||| || |||| Sbjct 17661 TCACTCGCGCCA 17650 >seq743 Length=263205 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 203290 CTATCGTGTCAGTTGTATCAGCGCAGCGCCGATGTCTTCTTAGGCGTGCCGTTTAACATC 203349 || ||||| ||| | |||||||| ||||| || || | ||||||||||| |||||| Sbjct 73066 CTCTCGTGCCAGCTCTATCAGCGTTCGGCCGACGTGTTTCTCGGCGTGCCGTTCAACATC 73007 Query 203350 GCCTCGTATGCTTTACTGACTGAGATGGTTGCTCAGCAGGTCA-ACATGGTG-GCCGAG- 203406 || || ||||| | ||||| |||| | || ||||| | || || |||| | Sbjct 73006 GCGTCCTATGCGCTGCTGACGATGATGATCGC---ACAGGTGACGGATCTTGCGCCGGGC 72950 Query 203407 GAGTTCGTCTGGACAGGCGGTGATACACATCTGTATTCCAACCATCTGGAGCAGGCCCGT 203466 || ||| || || ||| || | ||||||||||||||||||||||||||||| || Sbjct 72949 GATTTCATCCACACGCTCGGCGACGCGCATCTGTATTCCAACCATCTGGAGCAGGCGCGC 72890 Query 203467 CTGCA 203471 ||||| Sbjct 72889 CTGCA 72885 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608 ||||| |||||||| || |||| || ||||||| |||||||| || |||| || Sbjct 73483 GACCGCACCGGCACGGGTACGCTGTCGGTGTTCGGTCATCAGATGCGCTTCAACCTCGCC 73424 Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668 | || || || || ||| || |||||| | | || | || | ||||| ||| Sbjct 73423 GCCGGTTTTCCGATGACGACGACCAAAAAGCTGCCGTTCAAGGCGATTGTCCACGAACTG 73364 Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATC 202728 |||||||| || || ||||||||| | | || ||| | |||| || ||||| ||| Sbjct 73363 CTGTGGTTTCTCGCCGGCGACACCAACGTGCGCTATCTGCAGAATAATGGTGTCACCATC 73304 Query 202729 TGGGACGAATGGGCG 202743 |||||||| |||||| Sbjct 73303 TGGGACGAGTGGGCG 73289 >seq910 Length=120163 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2711 GTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCGT 2770 ||||||||| ||||||||||||| ||||||||| |||||||||||||||||| ||||| Sbjct 47985 GTAGCTCAGTTGGTTAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCGT 48044 Query 2771 CAGTCCTGCCAT 2782 | || ||||| Sbjct 48045 CTCTCGCGCCAT 48056 >seq998 Length=1052685 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 2711 GTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCGT 2770 ||||||||| ||||||||||||| ||||||||| |||||||||||||||||| ||||| Sbjct 499808 GTAGCTCAGTTGGTTAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCGT 499867 Query 2771 C 2771 | Sbjct 499868 C 499868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788305228854000