Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq743 181 6e-41 seq1482 174 9e-39 seq890 163 2e-35 >seq743 Length=263205 Score = 181 bits (200), Expect = 6e-41 Identities = 507/761 (67%), Gaps = 29/761 (4%) Strand=Plus/Minus Query 829 GAAGGATGATCGCACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGA 888 ||||| || ||||||||||| || |||||| |||||| ||| |||| | | | Sbjct 73490 GAAGGGCGACCGCACCGGCACGGGTACGCTGTCGGTGTTCGGTCATCAGATGCGCTTCAA 73431 Query 889 CCTCACCGAGGGCTTCCCGCTG--GTC-ACCACGAAGCGCGTCCACTTCAAATCGGTTGC 945 |||| ||| || || ||| || | | |||| |||| | | ||||| || ||| Sbjct 73430 CCTCGCCGCCGGTTTTCCGATGACGACGACCAAAAAGC---TGCCGTTCAAGGCGATTGT 73374 Query 946 GTACGAACTTCTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGG 1005 ||||||| |||||||| ||| |||||||| |||||| || | | || || Sbjct 73373 CCACGAACTGCTGTGGTTTCTCGCCGGCGACACCAACGTGCGCTATCTGCAGAATAATGG 73314 Query 1006 CGTCACCATCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGC 1065 ||||||||||||||||||||||| |||||| ||| | || ||||| ||||||||| Sbjct 73313 TGTCACCATCTGGGACGAGTGGGCGGACGCCAACGGGGATCTTGGTCCGGTCTACGGCAA 73254 Query 1066 GCAGTGGCGGCACTGGCATGTCGAGGACGGAGGATCGTCG-TGGATTGACCAGATCTCGG 1124 ||||||||| || |||| | ||| || |||| | || | || ||||||||| || Sbjct 73253 GCAGTGGCG---CT--CATGGC-AGG-CGCCGGATGGCCGCAGCATCGACCAGATCGCGA 73201 Query 1125 CCGCCGTGGAGCTGCTTCGCGAGGAC-CCTGACTCGCGCCGGAACGTGGTATCCGCATGG 1183 | | | || | ||| | || || || ||||| ||| | || ||||||| Sbjct 73200 ACCTCATCCGCATGATCCGC-ACCACGCCGGATTCGCGGCGGCTGATCGTCAGCGCATGG 73142 Query 1184 AACGTCGGTGACCTCAGCGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTGTAC 1243 || | || || ||||||| || | || ||||| | |||||||| | ||| Sbjct 73141 AATCCGGCCGATGTCGATCACATGGCGCTGCCGCCATGCCATTGCCTGTTCCAGTTCTAC 73082 Query 1244 GTCGTCGACGGCCGGCTCTCGCTGCAGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGT 1303 |||| ||||| |||||| ||| |||| ||||| || ||| |||| ||||| Sbjct 73081 GTCGCGAACGGCAAACTCTCGTGCCAGCTCTATCAGCGTTCGGCCGACGTGTTTCTCGGC 73022 Query 1304 GTGCCGTTCAATATCGCCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGC 1363 ||||||||||| ||||| || || ||||| || || ||| |||| ||| | | | Sbjct 73021 GTGCCGTTCAACATCGCGTCCTATGCGCTGCTGACGATGATGATCGCACAGGTGACGGAT 72962 Query 1364 CTGCGGGTGGGTGAGCTGATCTGGACCGGCGGCGACTGCCACATCTACAACAACCACGTC 1423 || | ||| || | ||| || ||||||| || | || |||||| | Sbjct 72961 CTTGCGCCGGGCGATTTCATCCACACGCTCGGCGACGCGCATCTGTATTCCAACCATCTG 72902 Query 1424 GACCAGGCGCTGATGCAGCTCCGCCGACGACCGCG-GCCCTACCCGAGGCTCGTGCTACA 1482 || ||||||| |||| || || || ||||| || || || ||| ||||| ||| Sbjct 72901 GAGCAGGCGCGCCTGCAACTGACGCGGCGGCCGCGCGCGCTGCC---GGC-CGTGC-ACA 72847 Query 1483 CCA--CGCGCCGT-----CGATCTTCGACTACCGGTACGAGCACATCCACCTCGTGAACT 1535 || | || || ||||||| | ||| |||||| || || | |||| ||||| Sbjct 72846 TCAATCCGGCGGTGAAGGATATCTTCGGGTTCCGTTACGAGGACTTCAAACTCGAGAACT 72787 Query 1536 ACGACCCGCACCCGTCGATCAAGGCGCCGGTGGCCGTCTGA 1576 |||| ||||| ||| |||||||| ||| || || ||| Sbjct 72786 ACGATCCGCATCCGCACATCAAGGCCGAGGTCGCGGTGTGA 72746 >seq1482 Length=483770 Score = 174 bits (192), Expect = 9e-39 Identities = 354/526 (67%), Gaps = 6/526 (1%) Strand=Plus/Plus Query 829 GAAGGATGATCGCACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGA 888 |||| | || |||||||||||||| |||||| ||||||| ||| ||| || | Sbjct 421428 GAAGCACGACCGCACCGGCACCGGAACGCTGTCGGTGTTCGGCCATCAGACGCGCCACAA 421487 Query 889 CCTCACCGAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTA 948 | ||| || ||||||||| |||| |||||| | | |||||||| | | | Sbjct 421488 TTTGGCCGCAGGATTCCCGCTGCTCACGACGAAGAAGCTATCCCTCAAATCGATCGTCCA 421547 Query 949 CGAACTTCTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGT 1008 || || || ||||| || | |||||||| ||| | ||| ||||| ||| ||||||| Sbjct 421548 TGAGCTGCTCTGGTTTCTGAAGGGCGACACCAACATCAAGTACCTCAAGGACCACGGCGT 421607 Query 1009 CACCATCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCA 1068 | | |||||||| |||||||| |||| ||| | |||||||| ||||| || |||| Sbjct 421608 CTCGATCTGGGATGAGTGGGCGGACGAGAACGGCGATCTCGGTCCGGTCTATGGTTCGCA 421667 Query 1069 GTGGCGGCACTGGCATGTCGAGGACGGAGGATCGTCGTGGATTGACCAGATCTCGGCCGC 1128 |||||| |||| | |||||| | | || || |||||| | || Sbjct 421668 GTGGCGTTCATGGCCCGCGCCGGACGGCCG------CAGCATCGATCAGATCGCCAACGT 421721 Query 1129 CGTGGAGCTGCTTCGCGAGGACCCTGACTCGCGCCGGAACGTGGTATCCGCATGGAACGT 1188 ||| ||| || | || | || || ||||| ||| | || || || ||||| Sbjct 421722 CGTCGAGATGATCCGGCGCAATCCGGATTCGCGGCGGCTGATCGTCTCGGCGTGGAATCC 421781 Query 1189 CGGTGACCTCAGCGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGT 1248 || || || | ||||| || | ||||||||| | |||| ||| | || |||| Sbjct 421782 CGCCGAGGTCGATAAGATGGCGCTGCCCCCGTGCCATTGCCTGTTTCAGTTCTATGTCGC 421841 Query 1249 CGACGGCCGGCTCTCGCTGCAGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCC 1308 | ||||| || ||| ||| |||| |||||| ||| || | |||||||| ||||| Sbjct 421842 CAACGGCAAACTGTCGTGCCAGCTCTATCAGCGCTCCGCTGATGTCTTCCTCGGCGTGCC 421901 Query 1309 GTTCAATATCGCCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAG 1354 |||||| ||||| || || ||||| || || ||| |||| ||| Sbjct 421902 GTTCAACATCGCATCCTATGCGCTGCTGACGATGATGGTCGCACAG 421947 >seq890 Length=125401 Score = 163 bits (180), Expect = 2e-35 Identities = 378/558 (68%), Gaps = 40/558 (7%) Strand=Plus/Minus Query 795 ACCTGTTGCGCGACATCCTGGAGACTGGCAAGTCGAAG-GATGATCGCACCGGCACCGGC 853 ||||| ||||||||||||| || | |||| | || | || || ||||||||||||||| Sbjct 47762 ACCTGCTGCGCGACATCCTCGACAATGGCGTG-CGCCGCGACGACCGCACCGGCACCGGC 47704 Query 854 ACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGACCTCACCGAGGGCTTCCCG---CTG 910 || ||| || ||||| |||| | || | || || || |||||||||| ||| Sbjct 47703 ACCCTGGGCGTCTTCGGTCGCCAGATTCGCTTTGATCTGGCCAAGGGCTTCCCCGTCCTG 47644 Query 911 GTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAACTTCTGTGGTTCCTCAGT 970 ||||| ||||| | ||| | ||| | |||||| ||||||||||| | Sbjct 47643 ACCACCAAGAAGC---TGCACCTGCGTTCGATCATCATCGAACTGCTGTGGTTCCTGCGC 47587 Query 971 GGCGACACGAACGTGAAGGC--GCTCAACGACAACGGCGTCACCATCTGGGACGAGTGGG 1028 ||||| || ||| | ||| |||||| || ||||||||| ||||||||| || |||| Sbjct 47586 GGCGAGACCAACAT--CGGCTGGCTCAAGGAGAACGGCGTCCGCATCTGGGATGAATGGG 47529 Query 1029 CCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGGCGGCACTGGCATGTCG 1088 | ||||||| || | || || || ||||| ||| |||||||| || | | | | || Sbjct 47528 CAGACGCCGAGGGCGAGCTTGGCCCCGTCTATGGCAAGCAGTGGC-GCTCGTGGACGGCG 47470 Query 1089 -AGGACGGAGGATCGTCGTGGATTGACCAGATCTCGGCCGCCGTGGAGCTGCTTCGCG-- 1145 |||||| | | || || ||||| || || | | ||| ||| || Sbjct 47469 CCGGACGGCCG--CCTC----ATCGACCAAAT---------CGAGAAACTGGTTCACGGG 47425 Query 1146 ---AGGAC----CCTGACTCGCGCCGGAACGTGGTATCCGCATGGAACGTCGGTGACCTC 1198 | ||| || || || || || | || ||| |||||| | ||| | Sbjct 47424 CTCAAGACCAATCCGAACGGTCGTCGCCACATCGTCAGCGCCTGGAACCCGGCGGACGTG 47365 Query 1199 AGCGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGTCGACGGCCGG 1258 ||||||||| || | ||||||||| | |||||||| | | ||||| ||||| Sbjct 47364 GACGACATGGCCCTGCCGCCGTGCCACTGCCTGTTCCAGTTCTTCGTCGCAGACGGAAAA 47305 Query 1259 CTCTCGCTG-CAGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATAT 1317 ||| |||| ||| | || ||||| ||||| ||||| ||||| || ||||||||||| || Sbjct 47304 CTC-AGCTGCCAGCTGTATCAGCGTAGCGCCGACATCTTCCTGGGCGTGCCGTTCAACAT 47246 Query 1318 CGCCTCGTACGCGCTCCT 1335 |||||| ||||| || || Sbjct 47245 CGCCTCCTACGCCCTGCT 47228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296125789960599