Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_031078.1
Length=50082
Score E
Sequences producing significant alignments: (Bits) Value
seq827 179 1e-40
seq316 168 2e-37
seq811 150 6e-32
seq998 134 4e-27
>seq827
Length=173386
Score = 179 bits (198), Expect = 1e-40
Identities = 262/368 (71%), Gaps = 7/368 (2%)
Strand=Plus/Minus
Query 40029 GGCTTGTCCAGCACGCGCGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGACCGAAG 40088
||| | | |||||||||| || |||| || | | ||||||| | ||||||
Sbjct 46064 GGCATCTGCAGCACGCGCCCCACGTCGCGCAGCACAGCCCGCGCCTGCAGGGTGCCGAAG 46005
Query 40089 GTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGATCACGTCG 40148
|| |||||| |||||| |||| ||||| | | || || |||||| ||
Sbjct 46004 GTGATGATCTGCGCGACCCGGTCCTTGCCGTAGTGGGCCTGCACATAGTCGATCACCTCT 45945
Query 40149 CCCCGTCGC--CGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGT 40206
|||| ||| | | || |||||||||||| | |||||||||||| || || || ||||
Sbjct 45944 TCCCGCCGCTCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATGGAGACCCGTTCCGGGT 45887
Query 40207 TCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGC 40266
||||||| |||||||| | || ||| | | | |||||| || || |||||| |||
Sbjct 45886 TCAGGAAGCGCTCGAACAGCAGGCCGAACCGCAGGGGGTCAAGATCGGTGATGGTCAGGG 45827
Query 40267 AGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCT 40326
| ||||||||||||||||||| | ||||| || || || || ||| | ||| | |
Sbjct 45826 ACCAGGCGACCAGCGAACCGGCGCCAGAGCCCCGCCCCGGCCCCACCGGGATGCCATGTT 45767
Query 40327 CCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAACCCCA---GCT 40383
|||||||||| ||||||||| | |||| |||||||||| ||||| |||| |||
Sbjct 45766 CCTTGGCCCATTTGATGAAGTCCGACACGATCAGGAAGTAGCCGGGGAAACCCATCTGCT 45707
Query 40384 GGATGATC 40391
||||||||
Sbjct 45706 GGATGATC 45699
Score = 113 bits (124), Expect = 1e-20
Identities = 92/112 (82%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 39221 CTTCTTCTTGCCCATGGCTCGGCGGAGAAGGTCGGCCTGACCCAGGCTGTACCCAGCGAG 39280
||||||||||||||| || ||||| ||||||||||| | |||||||||||| || || ||
Sbjct 46827 CTTCTTCTTGCCCATCGCGCGGCGCAGAAGGTCGGCTTCACCCAGGCTGTAGCCCGCCAG 46768
Query 39281 GATCTGTGCCGCCTTCTGCACCTGCTCCTGGTAGATGACCAGCCCGTAGGTC 39332
||| || || |||| |||||||||||||||||||| | || ||||||
Sbjct 46767 GATTTGGGCGATCTTCATCACCTGCTCCTGGTAGATGATGACGCCATAGGTC 46716
>seq316
Length=8699
Score = 168 bits (186), Expect = 2e-37
Identities = 267/374 (71%), Gaps = 14/374 (4%)
Strand=Plus/Minus
Query 40001 CTTGGTCAGCTTCTCGCCGACCTGGA---AGGGCTTGTCCAGCACGCGCGCCG-CGTCCT 40056
|||||||||||| ||| ||||| | ||| | | || ||| || |||| ||||
Sbjct 4516 CTTGGTCAGCTTGTCG---ACCTGCCCATACGGCATCTGCAACACCCG-GCCGACGTCGC 4461
Query 40057 TCATCGCGTTGCGCGCCTTGATCCGACCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCC 40116
|| | || |||||||| | | |||||||| |||||| ||||| | || | |
Sbjct 4460 GCAGCACGCCGCGCGCCTGCAACGTTCCGAAGGTGATGATCTGGGCGACGTGATCGGTGC 4401
Query 40117 CGTACTTCTCGGTG-ACGTACCTGATCACGTCGCCCCGTCG--CCGGTCATCGAAGTCGA 40173
|||| || || ||||| ||| || ||||| || || || | || ||||||||
Sbjct 4400 CGTAGCGG-CGCTGCACGTAGTCGATTACCTCGCCACGCCGGTCCTGACA--GAAGTCGA 4344
Query 40174 TGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40233
|||| | ||||||||| |||||||| ||||| || ||||| |||||||| | || |||
Sbjct 4343 TGTCGAAGTCGGGCATCGACACGCGTTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGA 4284
Query 40234 GCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCG 40293
|||| || || ||||| |||||| ||| | || || ||||||||||||||| | |
Sbjct 4283 AACGGATCGGATCGAGGTCGGTGATGGTGAGCGAATATGCCACCAGCGAACCGGCACCGG 4224
Query 40294 AGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGA 40353
|||| || || || || || | ||| | | |||||||||| ||||||||||| |
Sbjct 4223 AGCCGCGCCCCGGCCCCACAGGAATGCCCTGCGCCTTGGCCCACTTGATGAAGTCGGACA 4164
Query 40354 CGACCAGGAAGTAG 40367
||| ||||||||||
Sbjct 4163 CGATCAGGAAGTAG 4150
>seq811
Length=194255
Score = 150 bits (166), Expect = 6e-32
Identities = 234/327 (72%), Gaps = 8/327 (2%)
Strand=Plus/Plus
Query 40083 CCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTG-ACGTACCTGAT 40141
||||| || |||||| || |||| || ||||||||| || || || || | |||
Sbjct 30627 CCGAACGTGATGATCTGGGCTACCTGATCTCGCCCGTACTT-TCCCTGCACATAGCGGAT 30685
Query 40142 CACGTCGCCCCGTCG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGC 40199
||| || | || || || | || ||||||||| || | ||||||||| || |||||
Sbjct 30686 CACCTCTTCACGGCGGTCCTGACA--GAAGTCGATATCGAAGTCGGGCATCGAAACGCGA 30743
Query 40200 TCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATG 40259
|| ||||| ||||| || ||||| | ||| | | | | || || | ||| || ||
Sbjct 30744 TCCGGGTTGAGGAAGCGTTCGAAAAGCAGCGAGAACCGCAAAGGATCGACGTCAGTAATC 30803
Query 40260 CCGAG-GCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACAC 40318
|| ||| |||||||| |||||||||||| |||||||||| || || |||||| |
Sbjct 30804 GTCAGCGCA-TAGGCGACGAGCGAACCGGCACCCGAGCCACGGCCCGGCCCGACCGGAAT 30862
Query 40319 GCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAACCC 40378
||| | | || ||||| ||| ||||| || |||| |||||||||| |||||||
Sbjct 30863 GCCATGGGCTTTCGCCCATTTGATAAAGTCCGCAACGATCAGGAAGTAGCCCGGGAACTT 30922
Query 40379 CAGCTGGATGATCATGTCGATCTCGTA 40405
|| || |||| ||| ||||||||||
Sbjct 30923 CATGCGGGTGATGATGCCGATCTCGTA 30949
>seq998
Length=1052685
Score = 134 bits (148), Expect = 4e-27
Identities = 257/372 (69%), Gaps = 10/372 (3%)
Strand=Plus/Minus
Query 40001 CTTGGTCAGCTTCTCGCC--GACCTGGAAGGGCTTGTCCAGCACGCGCGCCGCGTCCTTC 40058
|||||| ||||| ||| | |||| | ||| | | || |||||| | |||| |
Sbjct 531843 CTTGGTGAGCTTGTCGACCTGACCATAA--GGCATCTGCAACACGCGGCCAACGTCGCGC 531786
Query 40059 ATCGCGTTGCGCGCCTTGATCCGACCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCG 40118
| | || |||||||| | |||||||| |||||| |||||| || ||
Sbjct 531785 AGCACGCCGCGCGCCTGCAGGGTGCCGAAGGTGATGATCTGACCGACCTGATCGCGGCCA 531726
Query 40119 TACTTCTCGGTGACGTACCTGATCACGTCGCCCCGTCG--CCGGTCATCGAAGTCGATGT 40176
|| ||| ||||| |||||| ||||| || || || | || |||||||||||
Sbjct 531725 TAGCGCTCCTGCACGTAATGGATCACCTCGCCGCGGCGATCCTGACA--GAAGTCGATGT 531668
Query 40177 CAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCG 40236
| | ||| ||||| |||||||||||||| || || || || ||||| | || |||
Sbjct 531667 CGAAGTCCGGCATCGACACGCGCTCGGGATTGAGAAAGCGTTCGAACAGCAGGCCGAAGC 531608
Query 40237 GGATGGGGTCCAGGTCTGTGATGCCGAG-GCAGTAGGCGACCAGCGAACCGGCAGCCGAG 40295
| | || || ||||| |||||| || ||| ||||| |||||||| || || | |||
Sbjct 531607 GCAGCGGATCGAGGTCGGTGATGGTCAGCGCA-TAGGCCACCAGCGAGCCCGCGCCGGAG 531549
Query 40296 CCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACG 40355
|| || || || |||||| | ||| | | |||| ||||| ||||||||||| |||
Sbjct 531548 CCGCGCCCCGGCCCGACCGGAATGCCCTGCGCCTTCGCCCACTTGATGAAGTCGGACACG 531489
Query 40356 ACCAGGAAGTAG 40367
| ||||||||||
Sbjct 531488 ATCAGGAAGTAG 531477
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160137949393672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |