Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq827 179 1e-40 seq316 168 2e-37 seq811 150 6e-32 seq998 134 4e-27 >seq827 Length=173386 Score = 179 bits (198), Expect = 1e-40 Identities = 262/368 (71%), Gaps = 7/368 (2%) Strand=Plus/Minus Query 40029 GGCTTGTCCAGCACGCGCGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGACCGAAG 40088 ||| | | |||||||||| || |||| || | | ||||||| | |||||| Sbjct 46064 GGCATCTGCAGCACGCGCCCCACGTCGCGCAGCACAGCCCGCGCCTGCAGGGTGCCGAAG 46005 Query 40089 GTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGATCACGTCG 40148 || |||||| |||||| |||| ||||| | | || || |||||| || Sbjct 46004 GTGATGATCTGCGCGACCCGGTCCTTGCCGTAGTGGGCCTGCACATAGTCGATCACCTCT 45945 Query 40149 CCCCGTCGC--CGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGT 40206 |||| ||| | | || |||||||||||| | |||||||||||| || || || |||| Sbjct 45944 TCCCGCCGCTCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATGGAGACCCGTTCCGGGT 45887 Query 40207 TCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGC 40266 ||||||| |||||||| | || ||| | | | |||||| || || |||||| ||| Sbjct 45886 TCAGGAAGCGCTCGAACAGCAGGCCGAACCGCAGGGGGTCAAGATCGGTGATGGTCAGGG 45827 Query 40267 AGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCT 40326 | ||||||||||||||||||| | ||||| || || || || ||| | ||| | | Sbjct 45826 ACCAGGCGACCAGCGAACCGGCGCCAGAGCCCCGCCCCGGCCCCACCGGGATGCCATGTT 45767 Query 40327 CCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAACCCCA---GCT 40383 |||||||||| ||||||||| | |||| |||||||||| ||||| |||| ||| Sbjct 45766 CCTTGGCCCATTTGATGAAGTCCGACACGATCAGGAAGTAGCCGGGGAAACCCATCTGCT 45707 Query 40384 GGATGATC 40391 |||||||| Sbjct 45706 GGATGATC 45699 Score = 113 bits (124), Expect = 1e-20 Identities = 92/112 (82%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 39221 CTTCTTCTTGCCCATGGCTCGGCGGAGAAGGTCGGCCTGACCCAGGCTGTACCCAGCGAG 39280 ||||||||||||||| || ||||| ||||||||||| | |||||||||||| || || || Sbjct 46827 CTTCTTCTTGCCCATCGCGCGGCGCAGAAGGTCGGCTTCACCCAGGCTGTAGCCCGCCAG 46768 Query 39281 GATCTGTGCCGCCTTCTGCACCTGCTCCTGGTAGATGACCAGCCCGTAGGTC 39332 ||| || || |||| |||||||||||||||||||| | || |||||| Sbjct 46767 GATTTGGGCGATCTTCATCACCTGCTCCTGGTAGATGATGACGCCATAGGTC 46716 >seq316 Length=8699 Score = 168 bits (186), Expect = 2e-37 Identities = 267/374 (71%), Gaps = 14/374 (4%) Strand=Plus/Minus Query 40001 CTTGGTCAGCTTCTCGCCGACCTGGA---AGGGCTTGTCCAGCACGCGCGCCG-CGTCCT 40056 |||||||||||| ||| ||||| | ||| | | || ||| || |||| |||| Sbjct 4516 CTTGGTCAGCTTGTCG---ACCTGCCCATACGGCATCTGCAACACCCG-GCCGACGTCGC 4461 Query 40057 TCATCGCGTTGCGCGCCTTGATCCGACCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCC 40116 || | || |||||||| | | |||||||| |||||| ||||| | || | | Sbjct 4460 GCAGCACGCCGCGCGCCTGCAACGTTCCGAAGGTGATGATCTGGGCGACGTGATCGGTGC 4401 Query 40117 CGTACTTCTCGGTG-ACGTACCTGATCACGTCGCCCCGTCG--CCGGTCATCGAAGTCGA 40173 |||| || || ||||| ||| || ||||| || || || | || |||||||| Sbjct 4400 CGTAGCGG-CGCTGCACGTAGTCGATTACCTCGCCACGCCGGTCCTGACA--GAAGTCGA 4344 Query 40174 TGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40233 |||| | ||||||||| |||||||| ||||| || ||||| |||||||| | || ||| Sbjct 4343 TGTCGAAGTCGGGCATCGACACGCGTTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGA 4284 Query 40234 GCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCG 40293 |||| || || ||||| |||||| ||| | || || ||||||||||||||| | | Sbjct 4283 AACGGATCGGATCGAGGTCGGTGATGGTGAGCGAATATGCCACCAGCGAACCGGCACCGG 4224 Query 40294 AGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGA 40353 |||| || || || || || | ||| | | |||||||||| ||||||||||| | Sbjct 4223 AGCCGCGCCCCGGCCCCACAGGAATGCCCTGCGCCTTGGCCCACTTGATGAAGTCGGACA 4164 Query 40354 CGACCAGGAAGTAG 40367 ||| |||||||||| Sbjct 4163 CGATCAGGAAGTAG 4150 >seq811 Length=194255 Score = 150 bits (166), Expect = 6e-32 Identities = 234/327 (72%), Gaps = 8/327 (2%) Strand=Plus/Plus Query 40083 CCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTG-ACGTACCTGAT 40141 ||||| || |||||| || |||| || ||||||||| || || || || | ||| Sbjct 30627 CCGAACGTGATGATCTGGGCTACCTGATCTCGCCCGTACTT-TCCCTGCACATAGCGGAT 30685 Query 40142 CACGTCGCCCCGTCG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGC 40199 ||| || | || || || | || ||||||||| || | ||||||||| || ||||| Sbjct 30686 CACCTCTTCACGGCGGTCCTGACA--GAAGTCGATATCGAAGTCGGGCATCGAAACGCGA 30743 Query 40200 TCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATG 40259 || ||||| ||||| || ||||| | ||| | | | | || || | ||| || || Sbjct 30744 TCCGGGTTGAGGAAGCGTTCGAAAAGCAGCGAGAACCGCAAAGGATCGACGTCAGTAATC 30803 Query 40260 CCGAG-GCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACAC 40318 || ||| |||||||| |||||||||||| |||||||||| || || |||||| | Sbjct 30804 GTCAGCGCA-TAGGCGACGAGCGAACCGGCACCCGAGCCACGGCCCGGCCCGACCGGAAT 30862 Query 40319 GCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAACCC 40378 ||| | | || ||||| ||| ||||| || |||| |||||||||| ||||||| Sbjct 30863 GCCATGGGCTTTCGCCCATTTGATAAAGTCCGCAACGATCAGGAAGTAGCCCGGGAACTT 30922 Query 40379 CAGCTGGATGATCATGTCGATCTCGTA 40405 || || |||| ||| |||||||||| Sbjct 30923 CATGCGGGTGATGATGCCGATCTCGTA 30949 >seq998 Length=1052685 Score = 134 bits (148), Expect = 4e-27 Identities = 257/372 (69%), Gaps = 10/372 (3%) Strand=Plus/Minus Query 40001 CTTGGTCAGCTTCTCGCC--GACCTGGAAGGGCTTGTCCAGCACGCGCGCCGCGTCCTTC 40058 |||||| ||||| ||| | |||| | ||| | | || |||||| | |||| | Sbjct 531843 CTTGGTGAGCTTGTCGACCTGACCATAA--GGCATCTGCAACACGCGGCCAACGTCGCGC 531786 Query 40059 ATCGCGTTGCGCGCCTTGATCCGACCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCG 40118 | | || |||||||| | |||||||| |||||| |||||| || || Sbjct 531785 AGCACGCCGCGCGCCTGCAGGGTGCCGAAGGTGATGATCTGACCGACCTGATCGCGGCCA 531726 Query 40119 TACTTCTCGGTGACGTACCTGATCACGTCGCCCCGTCG--CCGGTCATCGAAGTCGATGT 40176 || ||| ||||| |||||| ||||| || || || | || ||||||||||| Sbjct 531725 TAGCGCTCCTGCACGTAATGGATCACCTCGCCGCGGCGATCCTGACA--GAAGTCGATGT 531668 Query 40177 CAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCG 40236 | | ||| ||||| |||||||||||||| || || || || ||||| | || ||| Sbjct 531667 CGAAGTCCGGCATCGACACGCGCTCGGGATTGAGAAAGCGTTCGAACAGCAGGCCGAAGC 531608 Query 40237 GGATGGGGTCCAGGTCTGTGATGCCGAG-GCAGTAGGCGACCAGCGAACCGGCAGCCGAG 40295 | | || || ||||| |||||| || ||| ||||| |||||||| || || | ||| Sbjct 531607 GCAGCGGATCGAGGTCGGTGATGGTCAGCGCA-TAGGCCACCAGCGAGCCCGCGCCGGAG 531549 Query 40296 CCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACG 40355 || || || || |||||| | ||| | | |||| ||||| ||||||||||| ||| Sbjct 531548 CCGCGCCCCGGCCCGACCGGAATGCCCTGCGCCTTCGCCCACTTGATGAAGTCGGACACG 531489 Query 40356 ACCAGGAAGTAG 40367 | |||||||||| Sbjct 531488 ATCAGGAAGTAG 531477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160137949393672