Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq1482 134 2e-26 seq743 127 3e-24 seq890 116 6e-21 seq998 91.5 2e-13 seq843 86.0 1e-11 >seq1482 Length=483770 Score = 134 bits (148), Expect = 2e-26 Identities = 178/246 (72%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 201843 AAGC-CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAAC 201901 |||| |||||| ||||| || || || || || || ||||| | |||| |||| || Sbjct 421429 AAGCACGACCGCACCGGCACCGGAACGCTGTCGGTGTTCGGCCATCAGACGCGCCACAAT 421488 Query 201902 TTACAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCAT 201961 || | ||| || |||||| |||| || || ||| | ||| || ||| ||||| Sbjct 421489 TTGGCCGCAGGATTCCCGCTGCTCACGACGAAGAAGCTATCCCTCAAATCGATCGTCCAT 421548 Query 201962 GAGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTC 202021 |||||||| ||||| || | ||| |||||||||||| |||| | || ||| || |||| Sbjct 421549 GAGCTGCTCTGGTTTCTGAAGGGCGACACCAACATCAAGTACCTCAAGGACCACGGCGTC 421608 Query 202022 ACCATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAA 202081 | |||||||| || |||||||| | ||||| || | || ||||| || ||| ||| Sbjct 421609 TCGATCTGGGATGAGTGGGCGGACGAGAACGGCGATCTCGGTCCGGTCTATGGTTCGCAG 421668 Query 202082 TGGCGT 202087 |||||| Sbjct 421669 TGGCGT 421674 >seq743 Length=263205 Score = 127 bits (140), Expect = 3e-24 Identities = 175/245 (71%), Gaps = 10/245 (4%) Strand=Plus/Minus Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACA 201906 |||||| ||||| ||||| || || || || ||||| | ||||||||||| ||| | Sbjct 73484 CGACCGCACCGGCACGGGTACGCTGTCGGTGTTCGGTCATCAGATGCGCTTCAACCTCGC 73425 Query 201907 AGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAA-----TCATCCAT 201961 | ||||||||| || || ||||||||| | | ||||||| | |||| Sbjct 73424 CGCCGGTTTTCCGATGACGACGACCAAAAAGCTGC-----CGTTCAAGGCGATTGTCCAC 73370 Query 201962 GAGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTC 202021 || ||||||||||| ||| || ||||||||| | | ||| || | | || ||| Sbjct 73369 GAACTGCTGTGGTTTCTCGCCGGCGACACCAACGTGCGCTATCTGCAGAATAATGGTGTC 73310 Query 202022 ACCATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAA 202081 |||||||||||||| |||||||| ||||| || | || ||||| ||||| ||||| Sbjct 73309 ACCATCTGGGACGAGTGGGCGGACGCCAACGGGGATCTTGGTCCGGTCTACGGCAAGCAG 73250 Query 202082 TGGCG 202086 ||||| Sbjct 73249 TGGCG 73245 Score = 93.3 bits (102), Expect = 7e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 202490 CTTTCTTGTCAGCTCTATCAGCGTAGTGCGGACATGTTCCTTGGCGTACCGTTTAACATC 202549 || || || ||||||||||||||| || ||| |||| || ||||| ||||| |||||| Sbjct 73066 CTCTCGTGCCAGCTCTATCAGCGTTCGGCCGACGTGTTTCTCGGCGTGCCGTTCAACATC 73007 Query 202550 GCGTCTTACGCCTTGCTGGTACACATGTTTGCACAACAGGCGAACATGGCGGTAGGCGAC 202609 ||||| || || ||||| ||| | ||||| | || | | ||| ||||| Sbjct 73006 GCGTCCTATGCGCTGCTGACGATGATGATCGCACAGGTGACGGATCTTGCGCCGGGCGAT 72947 Query 202610 TTCGTCTGGACAGGTGGTGATACGCATCTGTACTCCAACCATCTGGAACAAGCTGACCTC 202669 ||| || || || || |||||||||| |||||||||||||| || || ||| Sbjct 72946 TTCATCCACACGCTCGGCGACGCGCATCTGTATTCCAACCATCTGGAGCAGGCGCGCCTG 72887 Query 202670 CAACTTACCCG 202680 ||||| || || Sbjct 72886 CAACTGACGCG 72876 >seq890 Length=125401 Score = 116 bits (128), Expect = 6e-21 Identities = 172/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAA-CTTAC 201905 |||||| ||||| || |||||||| || ||||| |||||||| |||||| | || | Sbjct 47722 CGACCGCACCGGCACCGGCACCCTGGGCGTCTTCGGTCGCCAGATTCGCTTTGATCTGGC 47663 Query 201906 AAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGC 201965 | | || || || | | |||||||| ||| | ||||| ||||| |||||| || | Sbjct 47662 CA-AGGGCTTCCCCGTCCTGACCACCAAGAAGCTGCACCTGCGTTCGATCATCATCGAAC 47604 Query 201966 TGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCA 202025 ||||||||||||| || || ||||||||| | | || || ||| |||| || Sbjct 47603 TGCTGTGGTTCCTGCGCGGCGAGACCAACATCGGCTGGCTCAAGGAGAACGGCGTCCGCA 47544 Query 202026 TCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGC 202085 ||||||| |||||||| || | || || | ||||| || || || ||||| |||| Sbjct 47543 TCTGGGATGAATGGGCAGACGCCGAGGGCGAGCTTGGCCCCGTCTATGGCAAGCAGTGGC 47484 Query 202086 G 202086 | Sbjct 47483 G 47483 >seq998 Length=1052685 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 614 GGGGAGTAGTTCAACTGGTAGAGCGTCGGTCTCCAAAACCGAATGTTGCAGGTTCGAGTC 673 |||| |||| ||| ||||||||| ||||||||||||||||| || ||||||||||||| Sbjct 267578 GGGGTGTAGCTCAGTTGGTAGAGCATCGGTCTCCAAAACCGAGGGTCGCAGGTTCGAGTC 267637 Query 674 CTGTCTCCCCTGCCA 688 ||| | ||||||||| Sbjct 267638 CTGCCGCCCCTGCCA 267652 >seq843 Length=2902 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 4030 CTCGTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCT 4089 || |||||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||| Sbjct 2390 CTTGTAGCTCAGTTGGTTAGAGCGCGCGCTTGATAAGCGTGAGGTCGGAAGTTCAAGTCT 2331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787988434790040