Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_031107.1
Length=246291
Score E
Sequences producing significant alignments: (Bits) Value
seq1482 134 2e-26
seq743 127 3e-24
seq890 116 6e-21
seq998 91.5 2e-13
seq843 86.0 1e-11
>seq1482
Length=483770
Score = 134 bits (148), Expect = 2e-26
Identities = 178/246 (72%), Gaps = 1/246 (0%)
Strand=Plus/Plus
Query 201843 AAGC-CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAAC 201901
|||| |||||| ||||| || || || || || || ||||| | |||| |||| ||
Sbjct 421429 AAGCACGACCGCACCGGCACCGGAACGCTGTCGGTGTTCGGCCATCAGACGCGCCACAAT 421488
Query 201902 TTACAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCAT 201961
|| | ||| || |||||| |||| || || ||| | ||| || ||| |||||
Sbjct 421489 TTGGCCGCAGGATTCCCGCTGCTCACGACGAAGAAGCTATCCCTCAAATCGATCGTCCAT 421548
Query 201962 GAGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTC 202021
|||||||| ||||| || | ||| |||||||||||| |||| | || ||| || ||||
Sbjct 421549 GAGCTGCTCTGGTTTCTGAAGGGCGACACCAACATCAAGTACCTCAAGGACCACGGCGTC 421608
Query 202022 ACCATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAA 202081
| |||||||| || |||||||| | ||||| || | || ||||| || ||| |||
Sbjct 421609 TCGATCTGGGATGAGTGGGCGGACGAGAACGGCGATCTCGGTCCGGTCTATGGTTCGCAG 421668
Query 202082 TGGCGT 202087
||||||
Sbjct 421669 TGGCGT 421674
>seq743
Length=263205
Score = 127 bits (140), Expect = 3e-24
Identities = 175/245 (71%), Gaps = 10/245 (4%)
Strand=Plus/Minus
Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACA 201906
|||||| ||||| ||||| || || || || ||||| | ||||||||||| ||| |
Sbjct 73484 CGACCGCACCGGCACGGGTACGCTGTCGGTGTTCGGTCATCAGATGCGCTTCAACCTCGC 73425
Query 201907 AGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAA-----TCATCCAT 201961
| ||||||||| || || ||||||||| | | ||||||| | ||||
Sbjct 73424 CGCCGGTTTTCCGATGACGACGACCAAAAAGCTGC-----CGTTCAAGGCGATTGTCCAC 73370
Query 201962 GAGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTC 202021
|| ||||||||||| ||| || ||||||||| | | ||| || | | || |||
Sbjct 73369 GAACTGCTGTGGTTTCTCGCCGGCGACACCAACGTGCGCTATCTGCAGAATAATGGTGTC 73310
Query 202022 ACCATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAA 202081
|||||||||||||| |||||||| ||||| || | || ||||| ||||| |||||
Sbjct 73309 ACCATCTGGGACGAGTGGGCGGACGCCAACGGGGATCTTGGTCCGGTCTACGGCAAGCAG 73250
Query 202082 TGGCG 202086
|||||
Sbjct 73249 TGGCG 73245
Score = 93.3 bits (102), Expect = 7e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 202490 CTTTCTTGTCAGCTCTATCAGCGTAGTGCGGACATGTTCCTTGGCGTACCGTTTAACATC 202549
|| || || ||||||||||||||| || ||| |||| || ||||| ||||| ||||||
Sbjct 73066 CTCTCGTGCCAGCTCTATCAGCGTTCGGCCGACGTGTTTCTCGGCGTGCCGTTCAACATC 73007
Query 202550 GCGTCTTACGCCTTGCTGGTACACATGTTTGCACAACAGGCGAACATGGCGGTAGGCGAC 202609
||||| || || ||||| ||| | ||||| | || | | ||| |||||
Sbjct 73006 GCGTCCTATGCGCTGCTGACGATGATGATCGCACAGGTGACGGATCTTGCGCCGGGCGAT 72947
Query 202610 TTCGTCTGGACAGGTGGTGATACGCATCTGTACTCCAACCATCTGGAACAAGCTGACCTC 202669
||| || || || || |||||||||| |||||||||||||| || || |||
Sbjct 72946 TTCATCCACACGCTCGGCGACGCGCATCTGTATTCCAACCATCTGGAGCAGGCGCGCCTG 72887
Query 202670 CAACTTACCCG 202680
||||| || ||
Sbjct 72886 CAACTGACGCG 72876
>seq890
Length=125401
Score = 116 bits (128), Expect = 6e-21
Identities = 172/241 (71%), Gaps = 2/241 (1%)
Strand=Plus/Minus
Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAA-CTTAC 201905
|||||| ||||| || |||||||| || ||||| |||||||| |||||| | || |
Sbjct 47722 CGACCGCACCGGCACCGGCACCCTGGGCGTCTTCGGTCGCCAGATTCGCTTTGATCTGGC 47663
Query 201906 AAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGC 201965
| | || || || | | |||||||| ||| | ||||| ||||| |||||| || |
Sbjct 47662 CA-AGGGCTTCCCCGTCCTGACCACCAAGAAGCTGCACCTGCGTTCGATCATCATCGAAC 47604
Query 201966 TGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCA 202025
||||||||||||| || || ||||||||| | | || || ||| |||| ||
Sbjct 47603 TGCTGTGGTTCCTGCGCGGCGAGACCAACATCGGCTGGCTCAAGGAGAACGGCGTCCGCA 47544
Query 202026 TCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGC 202085
||||||| |||||||| || | || || | ||||| || || || ||||| ||||
Sbjct 47543 TCTGGGATGAATGGGCAGACGCCGAGGGCGAGCTTGGCCCCGTCTATGGCAAGCAGTGGC 47484
Query 202086 G 202086
|
Sbjct 47483 G 47483
>seq998
Length=1052685
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 614 GGGGAGTAGTTCAACTGGTAGAGCGTCGGTCTCCAAAACCGAATGTTGCAGGTTCGAGTC 673
|||| |||| ||| ||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 267578 GGGGTGTAGCTCAGTTGGTAGAGCATCGGTCTCCAAAACCGAGGGTCGCAGGTTCGAGTC 267637
Query 674 CTGTCTCCCCTGCCA 688
||| | |||||||||
Sbjct 267638 CTGCCGCCCCTGCCA 267652
>seq843
Length=2902
Score = 86.0 bits (94), Expect = 1e-11
Identities = 55/60 (92%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 4030 CTCGTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCT 4089
|| |||||||||||||||||||||| ||| ||||||||| |||||||| |||||||||||
Sbjct 2390 CTTGTAGCTCAGTTGGTTAGAGCGCGCGCTTGATAAGCGTGAGGTCGGAAGTTCAAGTCT 2331
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 787988434790040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |