Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq890 183 5e-41 seq1482 150 3e-31 seq743 134 2e-26 >seq890 Length=125401 Score = 183 bits (202), Expect = 5e-41 Identities = 184/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 ||||| |||||||| |||||| | | ||||| ||||| || ||||| ||| | Sbjct 47721 GACCGCACCGGCACCGGCACCCTGGGCGTCTTCGGTCGCCAGATTCGCTTTGATCTGGCC 47662 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 || || ||||| | | |||||||| ||| |||||||||| || |||||| ||||||| Sbjct 47661 AAGGGCTTCCCCGTCCTGACCACCAAGAAGCTGCACCTGCGTTCGATCATCATCGAACTG 47602 Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250 ||||||||||| |||||| ||||||||| | || || || ||| |||| | ||| Sbjct 47601 CTGTGGTTCCTGCGCGGCGAGACCAACATCGGCTGGCTCAAGGAGAACGGCGTCCGCATC 47542 Query 196251 TGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 |||||||| |||||||| | || ||||| |||||||||||||| || ||||||||||| Sbjct 47541 TGGGATGAATGGGCAGACGCCGAGGGCGAGCTTGGCCCCGTCTATGGCAAGCAGTGGCG 47483 Score = 111 bits (122), Expect = 2e-19 Identities = 128/170 (75%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 196754 CTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATCGCTTC 196813 ||| ||||| || ||||| || || ||| ||||||| || || |||||||||||||| || Sbjct 47299 CTGCCAGCTGTATCAGCGTAGCGCCGACATCTTCCTGGGCGTGCCGTTCAACATCGCCTC 47240 Query 196814 GTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTGATTTCGT 196873 ||||| ||| || | |||||||| ||| || | ||| | |||| || ||||| Sbjct 47239 CTACGCCCTGCTGACCCTGATGGTGGCCCAGGTCGTGGGTCTGGAGCCGGGCGAGTTCGT 47180 Query 196874 CTGGACGGGCGGCGATACCCATCTGTACTCT-AACCATCTGGAACAGGCC 196922 | || |||||| |||| ||||| ||| |||||||||||||||||| Sbjct 47179 CCATACCTTCGGCGACGCCCACCTGTA-TCTGAACCATCTGGAACAGGCC 47131 >seq1482 Length=483770 Score = 150 bits (166), Expect = 3e-31 Identities = 181/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 ||||| |||||||| || || | || | ||||| |||||| ||| | || | Sbjct 421435 GACCGCACCGGCACCGGAACGCTGTCGGTGTTCGGCCATCAGACGCGCCACAATTTGGCC 421494 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 ||| ||||||||| |||| || || ||| | ||| ||| ||| |||| || ||| Sbjct 421495 GCAGGATTCCCGCTGCTCACGACGAAGAAGCTATCCCTCAAATCGATCGTCCATGAGCTG 421554 Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250 | ||||| ||||| ||||||||||||||| |||| || || ||| || |||| ||| Sbjct 421555 CTCTGGTTTCTGAAGGGCGACACCAACATCAAGTACCTCAAGGACCACGGCGTCTCGATC 421614 Query 196251 TGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCGT 196310 |||||||||||||| || || | |||||||| || || ||||| ||| |||||||||| Sbjct 421615 TGGGATGAGTGGGCGGACGAGAACGGCGATCTCGGTCCGGTCTATGGTTCGCAGTGGCGT 421674 Query 196311 GCATGG 196316 ||||| Sbjct 421675 TCATGG 421680 >seq743 Length=263205 Score = 134 bits (148), Expect = 2e-26 Identities = 196/272 (72%), Gaps = 4/272 (1%) Strand=Plus/Minus Query 196047 TTGAACGAAGGT-CACGAGAAAGCTGACCGTACCGGCACGGGCACCATCTCTATTTTCGG 196105 |||| ||| || ||| |||| | ||||| ||||||||||| || | || | ||||| Sbjct 73507 TTGAGCGACGGCGCAC-AGAAGGGCGACCGCACCGGCACGGGTACGCTGTCGGTGTTCGG 73449 Query 196106 GTATCAGATGCGTTTTGACCTGCGCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCA 196165 |||||||||| || |||| | || || ||| || || ||||||||| ||| Sbjct 73448 TCATCAGATGCGCTTCAACCTCGCCGCCGGTTTTCCGATGACGACGACCAAAAAGCTGC- 73390 Query 196166 CCTGCGAT-CTATCATCCACGAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGT 196224 | | | | | || ||||||||||| ||||||| || ||||||||||||| | | | Sbjct 73389 CGTTCAAGGCGATTGTCCACGAACTGCTGTGGTTTCTCGCCGGCGACACCAACGTGCGCT 73330 Query 196225 ATCTGAAAGACAACAACGTCAGTATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTG 196284 ||||| | | || |||| |||||||| |||||||| || | | || ||||||| Sbjct 73329 ATCTGCAGAATAATGGTGTCACCATCTGGGACGAGTGGGCGGACGCCAACGGGGATCTTG 73270 Query 196285 GCCCCGTCTACGGTAAGCAGTGGCGTGCATGG 196316 | || |||||||| ||||||||||| ||||| Sbjct 73269 GTCCGGTCTACGGCAAGCAGTGGCGCTCATGG 73238 Score = 89.7 bits (98), Expect = 8e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 196748 ACTGTCCTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACAT 196807 ||| || || ||||| || ||||| || ||||| || ||||| || ||||||||||| Sbjct 73067 ACTCTCGTGCCAGCTCTATCAGCGTTCGGCCGACGTGTTTCTCGGCGTGCCGTTCAACAT 73008 Query 196808 CGCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTGA 196867 ||| || || || ||| || ||| | |||||| | || | | | |||| || Sbjct 73007 CGCGTCCTATGCGCTGCTGACGATGATGATCGCACAGGTGACGGATCTTGCGCCGGGCGA 72948 Query 196868 TTTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGC 196921 |||| || ||| |||||| | |||||||| || ||||||||||| ||||| Sbjct 72947 TTTCATCCACACGCTCGGCGACGCGCATCTGTATTCCAACCATCTGGAGCAGGC 72894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770292766368840